Literature DB >> 27729493

The Evolutionary Origin and Genetic Makeup of Domestic Horses.

Pablo Librado1, Antoine Fages2, Charleen Gaunitz1, Michela Leonardi1, Stefanie Wagner3, Naveed Khan4, Kristian Hanghøj2, Saleh A Alquraishi5, Ahmed H Alfarhan5, Khaled A Al-Rasheid5, Clio Der Sarkissian1, Mikkel Schubert1, Ludovic Orlando6.   

Abstract

The horse was domesticated only 5.5 KYA, thousands of years after dogs, cattle, pigs, sheep, and goats. The horse nonetheless represents the domestic animal that most impacted human history; providing us with rapid transportation, which has considerably changed the speed and magnitude of the circulation of goods and people, as well as their cultures and diseases. By revolutionizing warfare and agriculture, horses also deeply influenced the politico-economic trajectory of human societies. Reciprocally, human activities have circled back on the recent evolution of the horse, by creating hundreds of domestic breeds through selective programs, while leading all wild populations to near extinction. Despite being tightly associated with humans, several aspects in the evolution of the domestic horse remain controversial. Here, we review recent advances in comparative genomics and paleogenomics that helped advance our understanding of the genetic foundation of domestic horses.
Copyright © 2016 by the Genetics Society of America.

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Year:  2016        PMID: 27729493      PMCID: PMC5068837          DOI: 10.1534/genetics.116.194860

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  119 in total

1.  Documenting domestication: the intersection of genetics and archaeology.

Authors:  Melinda A Zeder; Eve Emshwiller; Bruce D Smith; Daniel G Bradley
Journal:  Trends Genet       Date:  2006-02-03       Impact factor: 11.639

2.  Synchronous extinction of North America's Pleistocene mammals.

Authors:  J Tyler Faith; Todd A Surovell
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-23       Impact factor: 11.205

3.  Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.

Authors:  David Gokhman; Eitan Lavi; Kay Prüfer; Mario F Fraga; José A Riancho; Janet Kelso; Svante Pääbo; Eran Meshorer; Liran Carmel
Journal:  Science       Date:  2014-04-17       Impact factor: 47.728

4.  Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.

Authors:  Pablo Librado; Clio Der Sarkissian; Luca Ermini; Mikkel Schubert; Hákon Jónsson; Anders Albrechtsen; Matteo Fumagalli; Melinda A Yang; Cristina Gamba; Andaine Seguin-Orlando; Cecilie D Mortensen; Bent Petersen; Cindi A Hoover; Belen Lorente-Galdos; Artem Nedoluzhko; Eugenia Boulygina; Svetlana Tsygankova; Markus Neuditschko; Vidhya Jagannathan; Catherine Thèves; Ahmed H Alfarhan; Saleh A Alquraishi; Khaled A S Al-Rasheid; Thomas Sicheritz-Ponten; Ruslan Popov; Semyon Grigoriev; Anatoly N Alekseev; Edward M Rubin; Molly McCue; Stefan Rieder; Tosso Leeb; Alexei Tikhonov; Eric Crubézy; Montgomery Slatkin; Tomas Marques-Bonet; Rasmus Nielsen; Eske Willerslev; Juha Kantanen; Egor Prokhortchouk; Ludovic Orlando
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

5.  Limited number of patrilines in horse domestication.

Authors:  Gabriella Lindgren; Niclas Backström; June Swinburne; Linda Hellborg; Annika Einarsson; Kaj Sandberg; Gus Cothran; Carles Vilà; Matthew Binns; Hans Ellegren
Journal:  Nat Genet       Date:  2004-03-14       Impact factor: 38.330

6.  Inference of human population history from individual whole-genome sequences.

Authors:  Heng Li; Richard Durbin
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

7.  Four loci explain 83% of size variation in the horse.

Authors:  Shokouh Makvandi-Nejad; Gabriel E Hoffman; Jeremy J Allen; Erin Chu; Esther Gu; Alyssa M Chandler; Ariel I Loredo; Rebecca R Bellone; Jason G Mezey; Samantha A Brooks; Nathan B Sutter
Journal:  PLoS One       Date:  2012-07-11       Impact factor: 3.240

8.  Human evolution in Siberia: from frozen bodies to ancient DNA.

Authors:  Eric Crubézy; Sylvain Amory; Christine Keyser; Caroline Bouakaze; Martin Bodner; Morgane Gibert; Alexander Röck; Walther Parson; Anatoly Alexeev; Bertrand Ludes
Journal:  BMC Evol Biol       Date:  2010-01-25       Impact factor: 3.260

9.  A sequence polymorphism in MSTN predicts sprinting ability and racing stamina in thoroughbred horses.

Authors:  Emmeline W Hill; Jingjing Gu; Suzanne S Eivers; Rita G Fonseca; Beatrice A McGivney; Preethi Govindarajan; Nick Orr; Lisa M Katz; David E MacHugh; David MacHugh
Journal:  PLoS One       Date:  2010-01-20       Impact factor: 3.240

10.  Genome-wide analysis reveals selection for important traits in domestic horse breeds.

Authors:  Jessica L Petersen; James R Mickelson; Aaron K Rendahl; Stephanie J Valberg; Lisa S Andersson; Jeanette Axelsson; Ernie Bailey; Danika Bannasch; Matthew M Binns; Alexandre S Borges; Pieter Brama; Artur da Câmara Machado; Stefano Capomaccio; Katia Cappelli; E Gus Cothran; Ottmar Distl; Laura Fox-Clipsham; Kathryn T Graves; Gérard Guérin; Bianca Haase; Telhisa Hasegawa; Karin Hemmann; Emmeline W Hill; Tosso Leeb; Gabriella Lindgren; Hannes Lohi; Maria Susana Lopes; Beatrice A McGivney; Sofia Mikko; Nicholas Orr; M Cecilia T Penedo; Richard J Piercy; Marja Raekallio; Stefan Rieder; Knut H Røed; June Swinburne; Teruaki Tozaki; Mark Vaudin; Claire M Wade; Molly E McCue
Journal:  PLoS Genet       Date:  2013-01-17       Impact factor: 5.917

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  18 in total

1.  Genetic analysis of mitochondrial DNA from ancient Equus caballus bones found at archaeological site of Joseon dynasty period capital area.

Authors:  Jong Ha Hong; Chang Seok Oh; Sun Kim; In Uk Kang; Dong Hoon Shin
Journal:  Anim Biosci       Date:  2022-03-01

2.  Whole Mitogenomes Reveal the History of Swamp Buffalo: Initially Shaped by Glacial Periods and Eventually Modelled by Domestication.

Authors:  S Wang; N Chen; M R Capodiferro; T Zhang; H Lancioni; H Zhang; Y Miao; V Chanthakhoun; M Wanapat; M Yindee; Y Zhang; H Lu; L Caporali; R Dang; Y Huang; X Lan; M Plath; H Chen; J A Lenstra; A Achilli; C Lei
Journal:  Sci Rep       Date:  2017-07-05       Impact factor: 4.379

3.  Comprehensive analysis of microorganisms accompanying human archaeological remains.

Authors:  Anna Philips; Ireneusz Stolarek; Bogna Kuczkowska; Anna Juras; Luiza Handschuh; Janusz Piontek; Piotr Kozlowski; Marek Figlerowicz
Journal:  Gigascience       Date:  2017-07-01       Impact factor: 6.524

4.  The horse Y chromosome as an informative marker for tracing sire lines.

Authors:  Sabine Felkel; Claus Vogl; Doris Rigler; Viktoria Dobretsberger; Bhanu P Chowdhary; Ottmar Distl; Ruedi Fries; Vidhya Jagannathan; Jan E Janečka; Tosso Leeb; Gabriella Lindgren; Molly McCue; Julia Metzger; Markus Neuditschko; Thomas Rattei; Terje Raudsepp; Stefan Rieder; Carl-Johan Rubin; Robert Schaefer; Christian Schlötterer; Georg Thaller; Jens Tetens; Brandon Velie; Gottfried Brem; Barbara Wallner
Journal:  Sci Rep       Date:  2019-04-15       Impact factor: 4.379

5.  Population Genetic Analysis of the Estonian Native Horse Suggests Diverse and Distinct Genetics, Ancient Origin and Contribution from Unique Patrilines.

Authors:  Caitlin Castaneda; Rytis Juras; Anas Khanshour; Ingrid Randlaht; Barbara Wallner; Doris Rigler; Gabriella Lindgren; Terje Raudsepp; E Gus Cothran
Journal:  Genes (Basel)       Date:  2019-08-20       Impact factor: 4.096

6.  Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions.

Authors:  Chuan-Chao Wang; Sabine Reinhold; Alexey Kalmykov; Antje Wissgott; Guido Brandt; Choongwon Jeong; Olivia Cheronet; Matthew Ferry; Eadaoin Harney; Denise Keating; Swapan Mallick; Nadin Rohland; Kristin Stewardson; Anatoly R Kantorovich; Vladimir E Maslov; Vladimira G Petrenko; Vladimir R Erlikh; Biaslan Ch Atabiev; Rabadan G Magomedov; Philipp L Kohl; Kurt W Alt; Sandra L Pichler; Claudia Gerling; Harald Meller; Benik Vardanyan; Larisa Yeganyan; Alexey D Rezepkin; Dirk Mariaschk; Natalia Berezina; Julia Gresky; Katharina Fuchs; Corina Knipper; Stephan Schiffels; Elena Balanovska; Oleg Balanovsky; Iain Mathieson; Thomas Higham; Yakov B Berezin; Alexandra Buzhilova; Viktor Trifonov; Ron Pinhasi; Andrej B Belinskij; David Reich; Svend Hansen; Johannes Krause; Wolfgang Haak
Journal:  Nat Commun       Date:  2019-02-04       Impact factor: 14.919

7.  Evaluating the potential roles of the Gray and Extension loci in the coat coloration of Thoroughbred racing horses.

Authors:  Takahiro Sakamoto; Jeffrey A Fawcett; Hideki Innan
Journal:  J Equine Sci       Date:  2017-07-06

8.  Major inconsistencies of inferred population genetic structure estimated in a large set of domestic horse breeds using microsatellites.

Authors:  Stephan Michael Funk; Sonya Guedaoura; Rytis Juras; Absul Raziq; Faouzi Landolsi; Cristina Luís; Amparo Martínez Martínez; Abubakar Musa Mayaki; Fernando Mujica; Maria do Mar Oom; Lahoussine Ouragh; Yves-Marie Stranger; Jose Luis Vega-Pla; Ernest Gus Cothran
Journal:  Ecol Evol       Date:  2020-04-12       Impact factor: 2.912

9.  Genome sequence and comparative analysis of reindeer (Rangifer tarandus) in northern Eurasia.

Authors:  Melak Weldenegodguad; Kisun Pokharel; Yao Ming; Mervi Honkatukia; Jaana Peippo; Tiina Reilas; Knut H Røed; Juha Kantanen
Journal:  Sci Rep       Date:  2020-06-02       Impact factor: 4.379

10.  Whole-Genome Sequencing of Three Native Cattle Breeds Originating From the Northernmost Cattle Farming Regions.

Authors:  Melak Weldenegodguad; Ruslan Popov; Kisun Pokharel; Innokentyi Ammosov; Yao Ming; Zoya Ivanova; Juha Kantanen
Journal:  Front Genet       Date:  2019-01-11       Impact factor: 4.599

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