Literature DB >> 26094070

Detailed study of the dielectric function of a lysozyme solution studied with molecular dynamics simulations.

Stelios Floros1, Maria Liakopoulou-Kyriakides1, Kostas Karatasos1, Georgios E Papadopoulos2.   

Abstract

The spread of microwave technology and new microwave applications in medicine have revitalized interest in the dielectric behavior of biological systems. In this work, the Fröhlich-Kirkwood approach and the linear response theory have been applied in conjunction with molecular dynamics simulations to study the dielectric response of a lysozyme solution as a model. The overall experimental dielectric behavior of a 9.88 mM lysozyme solution has been reproduced in a quantitative manner by employing a method based on the decomposition of the hydration shells close to the solute. Detailed analysis of the calculated spectra identified two δ-processes located at 200 MHz (δ1) and about 1 GHz (δ2), respectively. δ1 is associated mainly with the first hydration shell, while δ2 mainly with bulk water and the second hydration shell. Moreover, indications for the existence of an even faster relaxation in the 10(11)-Hz frequency range were found for the first time. Finally, the static dielectric constants of lysozyme and its first and second hydration shells were calculated based on the Fröhlich-Kirkwood and the linear response theory approaches.

Entities:  

Keywords:  Dielectric function; Hydration; Molecular dynamics simulations; Protein

Mesh:

Substances:

Year:  2015        PMID: 26094070     DOI: 10.1007/s00249-015-1052-7

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  18 in total

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Authors:  Alla Oleinikova; Nikolai Smolin; Ivan Brovchenko
Journal:  Biophys J       Date:  2007-07-13       Impact factor: 4.033

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Journal:  J Phys Chem B       Date:  2011-05-10       Impact factor: 2.991

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Journal:  Biophys J       Date:  1995-10       Impact factor: 4.033

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Authors:  T Simonson; D Perahia
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-14       Impact factor: 11.205

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  1 in total

1.  Frequency Dependent Non- Thermal Effects of Oscillating Electric Fields in the Microwave Region on the Properties of a Solvated Lysozyme System: A Molecular Dynamics Study.

Authors:  Stelios Floros; Maria Liakopoulou-Kyriakides; Kostas Karatasos; Georgios E Papadopoulos
Journal:  PLoS One       Date:  2017-01-27       Impact factor: 3.240

  1 in total

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