Literature DB >> 26093250

Stabilization of Protein-Protein Interactions in chemical biology and drug discovery.

David Bier1, Philipp Thiel2, Jeroen Briels1, Christian Ottmann3.   

Abstract

More than 300,000 Protein-Protein Interactions (PPIs) can be found in human cells. This number is significantly larger than the number of single proteins, which are the classical targets for pharmacological intervention. Hence, specific and potent modulation of PPIs by small, drug-like molecules would tremendously enlarge the "druggable genome" enabling novel ways of drug discovery for essentially every human disease. This strategy is especially promising in diseases with difficult targets like intrinsically disordered proteins or transcription factors, for example neurodegeneration or metabolic diseases. Whereas the potential of PPI modulation has been recognized in terms of the development of inhibitors that disrupt or prevent a binary protein complex, the opposite (or complementary) strategy to stabilize PPIs has not yet been realized in a systematic manner. This fact is rather surprising given the number of impressive natural product examples that confer their activity by stabilizing specific PPIs. In addition, in recent years more and more examples of synthetic molecules are being published that work as PPI stabilizers, despite the fact that in the majority they initially have not been designed as such. Here, we describe examples from both the natural products as well as the synthetic molecules advocating for a stronger consideration of the PPI stabilization approach in chemical biology and drug discovery.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Interface stabilization; Natural products; Protein-ligand interaction; Small molecules; X-ray crystallography

Mesh:

Substances:

Year:  2015        PMID: 26093250     DOI: 10.1016/j.pbiomolbio.2015.05.002

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  10 in total

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Authors:  Tiago Rodrigues; Daniel Reker; Petra Schneider; Gisbert Schneider
Journal:  Nat Chem       Date:  2016-04-25       Impact factor: 24.427

Review 2.  Emerging modes-of-action in drug discovery.

Authors:  Eric Valeur; Frank Narjes; Christian Ottmann; Alleyn T Plowright
Journal:  Medchemcomm       Date:  2019-06-25       Impact factor: 3.597

3.  Solvent accessibility of E1α and E1β residues with known missense mutations causing pyruvate dehydrogenase complex (PDC) deficiency: Impact on PDC-E1 structure and function.

Authors:  Nicole H Ducich; Jason A Mears; Jirair K Bedoyan
Journal:  J Inherit Metab Dis       Date:  2022-02-01       Impact factor: 4.750

Review 4.  SPLINTS: small-molecule protein ligand interface stabilizers.

Authors:  Eric S Fischer; Eunyoung Park; Michael J Eck; Nicolas H Thomä
Journal:  Curr Opin Struct Biol       Date:  2016-01-30       Impact factor: 6.809

Review 5.  Molecular docking as a popular tool in drug design, an in silico travel.

Authors:  Jerome de Ruyck; Guillaume Brysbaert; Ralf Blossey; Marc F Lensink
Journal:  Adv Appl Bioinform Chem       Date:  2016-06-28

6.  In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks.

Authors:  Edson Luiz Folador; Paulo Vinícius Sanches Daltro de Carvalho; Wanderson Marques Silva; Rafaela Salgado Ferreira; Artur Silva; Michael Gromiha; Preetam Ghosh; Debmalya Barh; Vasco Azevedo; Richard Röttger
Journal:  BMC Syst Biol       Date:  2016-11-04

7.  The Molecular Tweezer CLR01 Stabilizes a Disordered Protein-Protein Interface.

Authors:  David Bier; Sumit Mittal; Kenny Bravo-Rodriguez; Andrea Sowislok; Xavier Guillory; Jeroen Briels; Christian Heid; Maria Bartel; Burkhard Wettig; Luc Brunsveld; Elsa Sanchez-Garcia; Thomas Schrader; Christian Ottmann
Journal:  J Am Chem Soc       Date:  2017-11-02       Impact factor: 15.419

8.  A New Mixed All-Atom/Coarse-Grained Model: Application to Melittin Aggregation in Aqueous Solution.

Authors:  Mee Y Shelley; Myvizhi Esai Selvan; Jun Zhao; Volodymyr Babin; Chenyi Liao; Jianing Li; John C Shelley
Journal:  J Chem Theory Comput       Date:  2017-07-11       Impact factor: 6.006

9.  Investigating the Effect of Tyrosine Kinase Inhibitors on the Interaction between Human Serum Albumin by Atomic Force Microscopy.

Authors:  Yuna Fu; Jianhua Wang; Yan Wang; Heng Sun
Journal:  Biomolecules       Date:  2022-06-11

10.  Chemical Proteomics for Target Discovery of Head-to-Tail Cyclized Mini-Proteins.

Authors:  Roland Hellinger; Kathrin Thell; Mina Vasileva; Taj Muhammad; Sunithi Gunasekera; Daniel Kümmel; Ulf Göransson; Christian W Becker; Christian W Gruber
Journal:  Front Chem       Date:  2017-10-11       Impact factor: 5.221

  10 in total

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