Literature DB >> 26092730

Oligomeric Properties of Survival Motor Neuron·Gemin2 Complexes.

Kushol Gupta1, Renee Martin2, Robert Sharp1, Kathryn L Sarachan2, Nisha S Ninan2, Gregory D Van Duyne3.   

Abstract

The survival motor neuron (SMN) protein forms the oligomeric core of a multiprotein complex required for the assembly of spliceosomal small nuclear ribonucleoproteins. Deletions and mutations in the SMN1 gene are associated with spinal muscular atrophy (SMA), a devastating neurodegenerative disease that is the leading heritable cause of infant mortality. Oligomerization of SMN is required for its function, and some SMA patient mutations disrupt the ability of SMN to self-associate. Here, we investigate the oligomeric nature of the SMN·Gemin2 complexes from humans and fission yeast (hSMN·Gemin2 and ySMN·Gemin2). We find that hSMN·Gemin2 forms oligomers spanning the dimer to octamer range. The YG box oligomerization domain of SMN is both necessary and sufficient to form these oligomers. ySMN·Gemin2 exists as a dimer-tetramer equilibrium with Kd = 1.0 ± 0.9 μM. A 1.9 Å crystal structure of the ySMN YG box confirms a high level of structural conservation with the human ortholog in this important region of SMN. Disulfide cross-linking experiments indicate that SMN tetramers are formed by self-association of stable, non-dissociating dimers. Thus, SMN tetramers do not form symmetric helical bundles such as those found in glycine zipper transmembrane oligomers. The dimer-tetramer nature of SMN complexes and the dimer of dimers organization of the SMN tetramer provide an important foundation for ongoing studies to understand the mechanism of SMN-assisted small nuclear ribonucleoprotein assembly and the underlying causes of SMA.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Gemin2; RNA metabolism; analytical ultracentrifugation; neurodegenerative disease; oligomerization; ribonuclear protein (RNP); snRNP assembly; spinal muscular atrophy; survival motor neuron

Mesh:

Substances:

Year:  2015        PMID: 26092730      PMCID: PMC4536428          DOI: 10.1074/jbc.M115.667279

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  56 in total

1.  The relationship between SMN, the spinal muscular atrophy protein, and nuclear coiled bodies in differentiated tissues and cultured cells.

Authors:  P J Young; T T Le; N thi Man; A H Burghes; G E Morris
Journal:  Exp Cell Res       Date:  2000-05-01       Impact factor: 3.905

2.  The Schizosaccharomyces pombe protein Yab8p and a novel factor, Yip1p, share structural and functional similarity with the spinal muscular atrophy-associated proteins SMN and SIP1.

Authors:  S Hannus; D Bühler; M Romano; B Seraphin; U Fischer
Journal:  Hum Mol Genet       Date:  2000-03-22       Impact factor: 6.150

3.  Characterization of the Schizosaccharomyces pombe orthologue of the human survival motor neuron (SMN) protein.

Authors:  N Owen; C L Doe; J Mellor; K E Davies
Journal:  Hum Mol Genet       Date:  2000-03-22       Impact factor: 6.150

4.  SMN mutants of spinal muscular atrophy patients are defective in binding to snRNP proteins.

Authors:  L Pellizzoni; B Charroux; G Dreyfuss
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

5.  A single nucleotide difference that alters splicing patterns distinguishes the SMA gene SMN1 from the copy gene SMN2.

Authors:  U R Monani; C L Lorson; D W Parsons; T W Prior; E J Androphy; A H Burghes; J D McPherson
Journal:  Hum Mol Genet       Date:  1999-07       Impact factor: 6.150

6.  A single nucleotide in the SMN gene regulates splicing and is responsible for spinal muscular atrophy.

Authors:  C L Lorson; E Hahnen; E J Androphy; B Wirth
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

7.  The survival motor neuron protein of Schizosacharomyces pombe. Conservation of survival motor neuron interaction domains in divergent organisms.

Authors:  S Paushkin; B Charroux; L Abel; R A Perkinson; L Pellizzoni; G Dreyfuss
Journal:  J Biol Chem       Date:  2000-08-04       Impact factor: 5.157

8.  Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

Authors:  P Schuck
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

9.  The spinal muscular atrophy disease gene product, SMN: A link between snRNP biogenesis and the Cajal (coiled) body.

Authors:  T Carvalho; F Almeida; A Calapez; M Lafarga; M T Berciano; M Carmo-Fonseca
Journal:  J Cell Biol       Date:  1999-11-15       Impact factor: 10.539

10.  Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems.

Authors:  B Charroux; L Pellizzoni; R A Perkinson; A Shevchenko; M Mann; G Dreyfuss
Journal:  J Cell Biol       Date:  1999-12-13       Impact factor: 10.539

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  13 in total

Review 1.  Specific genomic cues regulate Cajal body assembly.

Authors:  Iain A Sawyer; Gordon L Hager; Miroslav Dundr
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

2.  The regulatory protein 14-3-3β binds to the IQ motifs of myosin-IC independent of phosphorylation.

Authors:  Huan-Hong Ji; E Michael Ostap
Journal:  J Biol Chem       Date:  2019-12-06       Impact factor: 5.157

Review 3.  SMN - A chaperone for nuclear RNP social occasions?

Authors:  Amanda C Raimer; Kelsey M Gray; A Gregory Matera
Journal:  RNA Biol       Date:  2016-09-20       Impact factor: 4.652

4.  Mild SMN missense alleles are only functional in the presence of SMN2 in mammals.

Authors:  Chitra C Iyer; Kaitlyn M Corlett; Aurélie Massoni-Laporte; Sandra I Duque; Narasimhan Madabusi; Sarah Tisdale; Vicki L McGovern; Thanh T Le; Phillip G Zaworski; W David Arnold; Livio Pellizzoni; Arthur H M Burghes
Journal:  Hum Mol Genet       Date:  2018-10-01       Impact factor: 6.150

5.  Intragenic complementation of amino and carboxy terminal SMN missense mutations can rescue Smn null mice.

Authors:  Vicki L McGovern; Kaitlyn M Kray; W David Arnold; Sandra I Duque; Chitra C Iyer; Aurélie Massoni-Laporte; Eileen Workman; Aalapi Patel; Daniel J Battle; Arthur H M Burghes
Journal:  Hum Mol Genet       Date:  2020-11-01       Impact factor: 6.150

6.  Identification and structural analysis of the Schizosaccharomyces pombe SMN complex.

Authors:  Jyotishman Veepaschit; Aravindan Viswanathan; Rémy Bordonné; Clemens Grimm; Utz Fischer
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

7.  A novel human-specific splice isoform alters the critical C-terminus of Survival Motor Neuron protein.

Authors:  Joonbae Seo; Natalia N Singh; Eric W Ottesen; Brian M Lee; Ravindra N Singh
Journal:  Sci Rep       Date:  2016-08-02       Impact factor: 4.379

8.  Structural and functional analysis of an OB-fold in human Ctc1 implicated in telomere maintenance and bone marrow syndromes.

Authors:  Prashanth K Shastrula; Cory T Rice; Zhuo Wang; Paul M Lieberman; Emmanuel Skordalakes
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

9.  Self-oligomerization regulates stability of survival motor neuron protein isoforms by sequestering an SCFSlmb degron.

Authors:  Kelsey M Gray; Kevin A Kaifer; David Baillat; Ying Wen; Thomas R Bonacci; Allison D Ebert; Amanda C Raimer; Ashlyn M Spring; Sara Ten Have; Jacqueline J Glascock; Kushol Gupta; Gregory D Van Duyne; Michael J Emanuele; Angus I Lamond; Eric J Wagner; Christian L Lorson; A Gregory Matera
Journal:  Mol Biol Cell       Date:  2017-11-22       Impact factor: 4.138

10.  Assembly of higher-order SMN oligomers is essential for metazoan viability and requires an exposed structural motif present in the YG zipper dimer.

Authors:  Kushol Gupta; Ying Wen; Nisha S Ninan; Amanda C Raimer; Robert Sharp; Ashlyn M Spring; Kathryn L Sarachan; Meghan C Johnson; Gregory D Van Duyne; A Gregory Matera
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

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