Literature DB >> 26091891

The H-index of 'an approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database'.

Michael P Washburn1,2.   

Abstract

Over 20 years ago a remarkable paper was published in the Journal of American Society for Mass Spectrometry. This paper from Jimmy Eng, Ashley McCormack, and John Yates described the use of protein databases to drive the interpretation of tandem mass spectra of peptides. This paper now has over 3660 citations and continues to average more than 260 per year over the last decade. This is an amazing scientific achievement. The reason for this is the paper was a cutting edge development at the moment in time when genomes of organisms were being sequenced, protein and peptide mass spectrometry was growing into the field of proteomics, and the power of computing was growing quickly in accordance with Moore's law. This work by the Yates lab grew in importance as genomics, proteomics, and computation all advanced and eventually resulted in the widely used SEQUEST algorithm and platform for the analysis of tandem mass spectrometry data. This commentary provides an analysis of the impact of this paper by analyzing the citations it has generated and the impact of these citing papers. Graphical Abstract ᅟ.

Entities:  

Keywords:  Proteomics; SEQUEST; Tandem mass spectrometry; Yates

Mesh:

Substances:

Year:  2015        PMID: 26091891     DOI: 10.1007/s13361-015-1181-3

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  26 in total

Review 1.  Proteomic analysis of post-translational modifications.

Authors:  Matthias Mann; Ole N Jensen
Journal:  Nat Biotechnol       Date:  2003-03       Impact factor: 54.908

2.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

3.  Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry.

Authors:  John E P Syka; Joshua J Coon; Melanie J Schroeder; Jeffrey Shabanowitz; Donald F Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

4.  Large-scale characterization of HeLa cell nuclear phosphoproteins.

Authors:  Sean A Beausoleil; Mark Jedrychowski; Daniel Schwartz; Joshua E Elias; Judit Villén; Jiaxu Li; Martin A Cohn; Lewis C Cantley; Steven P Gygi
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-09       Impact factor: 11.205

5.  An index to quantify an individual's scientific research output.

Authors:  J E Hirsch
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-07       Impact factor: 11.205

6.  Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome.

Authors:  Junmin Peng; Joshua E Elias; Carson C Thoreen; Larry J Licklider; Steven P Gygi
Journal:  J Proteome Res       Date:  2003 Jan-Feb       Impact factor: 4.466

7.  The innate immune response to bacterial flagellin is mediated by Toll-like receptor 5.

Authors:  F Hayashi; K D Smith; A Ozinsky; T R Hawn; E C Yi; D R Goodlett; J K Eng; S Akira; D M Underhill; A Aderem
Journal:  Nature       Date:  2001-04-26       Impact factor: 49.962

8.  Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides.

Authors:  J R Yates; J K Eng; K R Clauser; A L Burlingame
Journal:  J Am Soc Mass Spectrom       Date:  1996-11       Impact factor: 3.109

9.  Direct database searching with MALDI-PSD spectra of peptides.

Authors:  P R Griffin; M J MacCoss; J K Eng; R A Blevins; J S Aaronson; J R Yates
Journal:  Rapid Commun Mass Spectrom       Date:  1995       Impact factor: 2.419

10.  Direct analysis of protein complexes using mass spectrometry.

Authors:  A J Link; J Eng; D M Schieltz; E Carmack; G J Mize; D R Morris; B M Garvik; J R Yates
Journal:  Nat Biotechnol       Date:  1999-07       Impact factor: 54.908

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  4 in total

1.  Common and phylogenetically widespread coding for peptides by bacterial small RNAs.

Authors:  Robin C Friedman; Stefan Kalkhof; Olivia Doppelt-Azeroual; Stephan A Mueller; Martina Chovancová; Martin von Bergen; Benno Schwikowski
Journal:  BMC Genomics       Date:  2017-07-21       Impact factor: 3.969

2.  Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse model.

Authors:  Federica Anastasi; Francesco Greco; Marialaura Dilillo; Eleonora Vannini; Valentina Cappello; Laura Baroncelli; Mario Costa; Mauro Gemmi; Matteo Caleo; Liam A McDonnell
Journal:  Sci Rep       Date:  2020-11-24       Impact factor: 4.379

3.  Proteomics Profiling of Neuron-Derived Small Extracellular Vesicles from Human Plasma: Enabling Single-Subject Analysis.

Authors:  Federica Anastasi; Silvia Maria Masciandaro; Renata Del Carratore; Maria Teresa Dell'Anno; Giovanni Signore; Alessandra Falleni; Liam A McDonnell; Paolo Bongioanni
Journal:  Int J Mol Sci       Date:  2021-03-14       Impact factor: 5.923

4.  Equine Mesenchymal Stem/Stromal Cells Freeze-Dried Secretome (Lyosecretome) for the Treatment of Musculoskeletal Diseases: Production Process Validation and Batch Release Test for Clinical Use.

Authors:  Michela Mocchi; Stefano Grolli; Silvia Dotti; Dario Di Silvestre; Riccardo Villa; Priscilla Berni; Virna Conti; Giulia Passignani; Francesca Brambilla; Maurizio Del Bue; Laura Catenacci; Milena Sorrenti; Lorena Segale; Elia Bari; Pierluigi Mauri; Maria Luisa Torre; Sara Perteghella
Journal:  Pharmaceuticals (Basel)       Date:  2021-06-10
  4 in total

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