Literature DB >> 26090203

1-{[(E)-(4-{[(2Z)-2,3-Di-hydro-1,3-thia-zol-2-yl-idene]sulfamo-yl}phen-yl)iminium-yl]meth-yl}naphthalen-2-olate.

Muhammad Shahid1, Muhammad Nawaz Tahir2, Muhammad Salim1, Munawar Ali Munawar1, Hazoor Ahmad Shad3.   

Abstract

In the title zwitterionic compound, C20H15N3O3S2, the n class="Chemical">2-hy-droxy-naphthalene-1-carbaldehyde group A, the anilinic unit B and the 1,3-thia-zol-2(3H)-imine group C are each approximately planar with r.m.s. deviation of 0.0721, 0.0412 and 0.0125 Å, respectively. The dihedral angles between A/B, A/C and B/C are 24.70 (10), 79.97 (7) and 83.14 (6)°, respectively. There is an intra-molecular S(6) motif involving the imine N-H and the naphtho-late O atom. In the crystal, inversion-related mol-ecules form dimers as a result of N-H⋯N and N-H⋯O hydrogen bonds with R 2 (2)(8) and R 1 (2)(4) motifs, respectively. Weak π-π inter-actions between the benzene and naphthyl rings of inversion-related mol-ecules have ring centroid-centroid distances of 3.638 (2) and 4.041 (2) Å. A C-H⋯π inter-action occurs between the thia-zol ring and the benzene ring of an adjacent mol-ecule.

Entities:  

Keywords:  C—H⋯π inter­actions; crystal structure; hydrogen bonding; sulfa­thia­zole; zwitterionic compound; π–π inter­actions

Year:  2015        PMID: 26090203      PMCID: PMC4459363          DOI: 10.1107/S2056989015009640

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For related structures, see: El-Ghamry et al. (2008 ▸); Hebbachi et al. (2013 ▸); Zhang (2009 ▸).

Experimental

Crystal data

C20H15N3O3S2 M = 409.47 Triclinic, a = 9.127 (2) Å b = 10.1417 (12) Å c = 11.355 (3) Å α = 114.526 (6)° β = 91.556 (5)° γ = 102.044 (5)° V = 927.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 296 K 0.32 × 0.26 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▸) T min = 0.910, T max = 0.948 13121 measured reflections 3554 independent reflections 2086 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.127 S = 1.01 3554 reflections 253 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.25 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014/7 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015009640/pk2552sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015009640/pk2552Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015009640/pk2552Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015009640/pk2552fig1.tif View of the title compound with the atom numbering scheme. Thermal ellipsoids are drawn at the 50% probability level. H-atoms are shown as small circles of arbitrary radius. The dotted lines show intra­molecular H-bonding. Click here for additional data file. PLATON . DOI: 10.1107/S2056989015009640/pk2552fig2.tif A partial packing plot (PLATON; Spek, 2009), which shows that mol­ecules form dimers and are inter­linked forming various ring motifs. CCDC reference: 1401829 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H15N3O3S2Z = 2
Mr = 409.47F(000) = 424
Triclinic, P1Dx = 1.466 Mg m3
a = 9.127 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.1417 (12) ÅCell parameters from 2086 reflections
c = 11.355 (3) Åθ = 2.3–26.0°
α = 114.526 (6)°µ = 0.31 mm1
β = 91.556 (5)°T = 296 K
γ = 102.044 (5)°Plate, light orange
V = 927.5 (3) Å30.32 × 0.26 × 0.18 mm
Bruker Kappa APEXII CCD diffractometer3554 independent reflections
Radiation source: fine-focus sealed tube2086 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.052
Detector resolution: 7.80 pixels mm-1θmax = 26.0°, θmin = 2.3°
ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→10
Tmin = 0.910, Tmax = 0.948l = −13→13
13121 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0596P)2] where P = (Fo2 + 2Fc2)/3
3554 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.26196 (9)0.20802 (8)0.46258 (8)0.0436 (2)
S20.57914 (9)0.19236 (8)0.58749 (9)0.0571 (3)
O1−0.0869 (3)0.3290 (3)1.1505 (2)0.0747 (7)
O20.1538 (2)0.2532 (2)0.4023 (2)0.0580 (6)
O30.2907 (2)0.0638 (2)0.38835 (19)0.0498 (5)
N1−0.0117 (3)0.1888 (3)0.9256 (2)0.0512 (7)
H10.00350.26990.99640.061*
N20.4105 (3)0.3410 (2)0.5032 (2)0.0449 (6)
N30.6639 (3)0.4405 (2)0.5815 (2)0.0481 (7)
H3A0.66520.51870.56890.058*
C1−0.1806 (4)0.2077 (4)1.1338 (3)0.0561 (9)
C2−0.2866 (5)0.2126 (4)1.2278 (4)0.0728 (11)
H2−0.28250.30161.30070.087*
C3−0.3895 (4)0.0895 (4)1.2094 (4)0.0691 (10)
H3−0.45860.09681.26920.083*
C4−0.4008 (4)−0.0546 (4)1.1024 (3)0.0526 (8)
C5−0.5088 (4)−0.1806 (4)1.0914 (4)0.0661 (10)
H5−0.5771−0.17091.15200.079*
C6−0.5151 (4)−0.3180 (5)0.9924 (4)0.0789 (11)
H6−0.5871−0.40170.98520.095*
C7−0.4126 (4)−0.3300 (4)0.9034 (4)0.0730 (11)
H7−0.4144−0.42350.83720.088*
C8−0.3080 (4)−0.2069 (4)0.9106 (3)0.0586 (9)
H8−0.2418−0.21860.84820.070*
C9−0.2989 (3)−0.0644 (3)1.0099 (3)0.0471 (8)
C10−0.1920 (3)0.0706 (3)1.0238 (3)0.0444 (7)
C11−0.1073 (3)0.0693 (3)0.9224 (3)0.0477 (8)
H11−0.1189−0.02060.84870.057*
C120.0678 (3)0.1932 (3)0.8206 (3)0.0432 (7)
C130.0942 (3)0.0669 (3)0.7250 (3)0.0480 (8)
H130.0687−0.02330.73160.058*
C140.1589 (3)0.0737 (3)0.6188 (3)0.0456 (8)
H140.1759−0.01260.55340.055*
C150.1990 (3)0.2078 (3)0.6081 (3)0.0402 (7)
C160.1789 (3)0.3370 (3)0.7084 (3)0.0541 (8)
H160.20800.42820.70390.065*
C170.1152 (3)0.3290 (3)0.8155 (3)0.0529 (8)
H170.10420.41580.88430.063*
C180.5396 (3)0.3322 (3)0.5515 (3)0.0396 (7)
C190.7905 (4)0.4204 (4)0.6338 (3)0.0587 (9)
H190.88420.48820.65810.070*
C200.7636 (4)0.2935 (4)0.6456 (3)0.0630 (9)
H200.83540.26250.68090.076*
U11U22U33U12U13U23
S10.0429 (5)0.0418 (4)0.0496 (5)0.0035 (3)0.0057 (4)0.0262 (4)
S20.0582 (6)0.0460 (5)0.0718 (6)0.0055 (4)−0.0039 (4)0.0340 (4)
O10.0905 (19)0.0571 (14)0.0641 (16)0.0136 (14)0.0200 (13)0.0156 (12)
O20.0507 (14)0.0628 (13)0.0693 (15)0.0066 (11)−0.0034 (11)0.0410 (12)
O30.0565 (14)0.0419 (11)0.0489 (13)0.0080 (10)0.0141 (10)0.0191 (10)
N10.0498 (17)0.0543 (16)0.0462 (16)0.0106 (13)0.0084 (13)0.0193 (13)
N20.0409 (15)0.0411 (14)0.0596 (17)0.0020 (11)0.0073 (13)0.0319 (12)
N30.0494 (17)0.0361 (13)0.0606 (17)0.0035 (12)0.0112 (13)0.0255 (12)
C10.068 (2)0.052 (2)0.053 (2)0.0151 (18)0.0109 (18)0.0261 (17)
C20.100 (3)0.067 (2)0.063 (3)0.033 (2)0.037 (2)0.0310 (19)
C30.077 (3)0.090 (3)0.062 (2)0.038 (2)0.035 (2)0.044 (2)
C40.048 (2)0.078 (2)0.048 (2)0.0256 (18)0.0149 (16)0.0382 (18)
C50.056 (2)0.093 (3)0.069 (3)0.017 (2)0.0168 (19)0.054 (2)
C60.066 (3)0.085 (3)0.087 (3)−0.003 (2)0.005 (2)0.049 (3)
C70.077 (3)0.068 (2)0.063 (3)0.004 (2)0.015 (2)0.0234 (19)
C80.056 (2)0.065 (2)0.051 (2)0.0091 (18)0.0108 (17)0.0242 (18)
C90.045 (2)0.062 (2)0.0433 (19)0.0161 (16)0.0071 (15)0.0295 (16)
C100.0411 (19)0.0555 (19)0.0433 (19)0.0162 (15)0.0104 (15)0.0254 (15)
C110.043 (2)0.0460 (18)0.052 (2)0.0091 (15)0.0041 (16)0.0198 (15)
C120.0356 (18)0.0515 (18)0.0451 (19)0.0085 (14)0.0058 (14)0.0241 (15)
C130.046 (2)0.0468 (18)0.060 (2)0.0105 (15)0.0152 (16)0.0312 (16)
C140.047 (2)0.0458 (17)0.049 (2)0.0104 (14)0.0159 (15)0.0252 (15)
C150.0320 (17)0.0415 (16)0.0461 (18)0.0048 (13)0.0063 (13)0.0198 (14)
C160.052 (2)0.0432 (18)0.064 (2)0.0038 (15)0.0133 (17)0.0230 (16)
C170.054 (2)0.0410 (17)0.054 (2)0.0090 (15)0.0138 (17)0.0120 (15)
C180.044 (2)0.0334 (15)0.0400 (17)0.0041 (14)0.0088 (14)0.0165 (13)
C190.042 (2)0.055 (2)0.070 (2)0.0014 (16)0.0001 (17)0.0240 (18)
C200.048 (2)0.061 (2)0.075 (2)0.0089 (17)−0.0123 (17)0.0276 (18)
S1—O21.437 (2)C5—H50.9300
S1—O31.4373 (19)C6—C71.382 (5)
S1—N21.599 (2)C6—H60.9300
S1—C151.765 (3)C7—C81.375 (4)
S2—C201.726 (3)C7—H70.9300
S2—C181.731 (3)C8—C91.400 (4)
O1—C11.280 (4)C8—H80.9300
N1—C111.323 (3)C9—C101.451 (4)
N1—C121.424 (4)C10—C111.401 (4)
N1—H10.8600C11—H110.9300
N2—C181.322 (3)C12—C131.366 (4)
N3—C181.325 (3)C12—C171.381 (4)
N3—C191.375 (4)C13—C141.379 (4)
N3—H3A0.8600C13—H130.9300
C1—C101.412 (4)C14—C151.389 (4)
C1—C21.453 (4)C14—H140.9300
C2—C31.329 (5)C15—C161.386 (4)
C2—H20.9300C16—C171.388 (4)
C3—C41.442 (4)C16—H160.9300
C3—H30.9300C17—H170.9300
C4—C51.398 (4)C19—C201.322 (4)
C4—C91.408 (4)C19—H190.9300
C5—C61.367 (5)C20—H200.9300
O2—S1—O3117.41 (13)C9—C8—H8119.3
O2—S1—N2103.97 (12)C8—C9—C4116.5 (3)
O3—S1—N2112.68 (13)C8—C9—C10124.6 (3)
O2—S1—C15108.18 (13)C4—C9—C10118.9 (3)
O3—S1—C15106.92 (12)C11—C10—C1118.7 (3)
N2—S1—C15107.23 (13)C11—C10—C9120.1 (3)
C20—S2—C1890.63 (15)C1—C10—C9121.0 (3)
C11—N1—C12125.0 (3)N1—C11—C10123.7 (3)
C11—N1—H1117.5N1—C11—H11118.1
C12—N1—H1117.5C10—C11—H11118.1
C18—N2—S1121.34 (19)C13—C12—C17120.2 (3)
C18—N3—C19116.1 (2)C13—C12—N1121.6 (3)
C18—N3—H3A122.0C17—C12—N1118.2 (3)
C19—N3—H3A122.0C12—C13—C14119.7 (3)
O1—C1—C10123.0 (3)C12—C13—H13120.2
O1—C1—C2118.7 (3)C14—C13—H13120.2
C10—C1—C2118.2 (3)C13—C14—C15120.9 (3)
C3—C2—C1119.8 (3)C13—C14—H14119.6
C3—C2—H2120.1C15—C14—H14119.6
C1—C2—H2120.1C16—C15—C14119.2 (3)
C2—C3—C4124.1 (3)C16—C15—S1121.3 (2)
C2—C3—H3118.0C14—C15—S1119.4 (2)
C4—C3—H3118.0C15—C16—C17119.4 (3)
C5—C4—C9121.1 (3)C15—C16—H16120.3
C5—C4—C3121.0 (3)C17—C16—H16120.3
C9—C4—C3117.8 (3)C12—C17—C16120.5 (3)
C6—C5—C4120.7 (3)C12—C17—H17119.8
C6—C5—H5119.6C16—C17—H17119.8
C4—C5—H5119.6N2—C18—N3121.3 (3)
C5—C6—C7118.7 (3)N2—C18—S2129.4 (2)
C5—C6—H6120.6N3—C18—S2109.3 (2)
C7—C6—H6120.6C20—C19—N3112.2 (3)
C8—C7—C6121.4 (3)C20—C19—H19123.9
C8—C7—H7119.3N3—C19—H19123.9
C6—C7—H7119.3C19—C20—S2111.8 (3)
C7—C8—C9121.4 (3)C19—C20—H20124.1
C7—C8—H8119.3S2—C20—H20124.1
O2—S1—N2—C18−173.8 (2)C9—C10—C11—N1177.4 (3)
O3—S1—N2—C18−45.6 (3)C11—N1—C12—C13−23.2 (4)
C15—S1—N2—C1871.8 (3)C11—N1—C12—C17155.2 (3)
O1—C1—C2—C3177.0 (3)C17—C12—C13—C14−4.5 (5)
C10—C1—C2—C30.7 (5)N1—C12—C13—C14173.9 (3)
C1—C2—C3—C42.6 (6)C12—C13—C14—C150.6 (5)
C2—C3—C4—C5177.8 (4)C13—C14—C15—C162.6 (4)
C2—C3—C4—C9−1.8 (5)C13—C14—C15—S1−173.1 (2)
C9—C4—C5—C62.2 (5)O2—S1—C15—C16−60.6 (3)
C3—C4—C5—C6−177.5 (3)O3—S1—C15—C16172.1 (2)
C4—C5—C6—C70.0 (6)N2—S1—C15—C1651.0 (3)
C5—C6—C7—C8−1.7 (6)O2—S1—C15—C14115.0 (2)
C6—C7—C8—C91.2 (6)O3—S1—C15—C14−12.4 (3)
C7—C8—C9—C40.9 (5)N2—S1—C15—C14−133.4 (2)
C7—C8—C9—C10−179.9 (3)C14—C15—C16—C17−1.9 (4)
C5—C4—C9—C8−2.6 (4)S1—C15—C16—C17173.7 (2)
C3—C4—C9—C8177.1 (3)C13—C12—C17—C165.2 (5)
C5—C4—C9—C10178.2 (3)N1—C12—C17—C16−173.2 (3)
C3—C4—C9—C10−2.1 (4)C15—C16—C17—C12−1.9 (5)
O1—C1—C10—C11−6.1 (5)S1—N2—C18—N3177.9 (2)
C2—C1—C10—C11170.0 (3)S1—N2—C18—S2−2.8 (4)
O1—C1—C10—C9179.3 (3)C19—N3—C18—N2178.6 (3)
C2—C1—C10—C9−4.6 (5)C19—N3—C18—S2−0.9 (3)
C8—C9—C10—C1111.7 (5)C20—S2—C18—N2−178.0 (3)
C4—C9—C10—C11−169.2 (3)C20—S2—C18—N31.4 (2)
C8—C9—C10—C1−173.8 (3)C18—N3—C19—C20−0.4 (4)
C4—C9—C10—C15.3 (4)N3—C19—C20—S21.5 (4)
C12—N1—C11—C10−175.4 (3)C18—S2—C20—C19−1.7 (3)
C1—C10—C11—N12.8 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.861.872.550 (3)134
N3—H3A···S1i0.862.883.729 (2)168
N3—H3A···O2i0.862.443.131 (3)138
N3—H3A···N2i0.862.132.943 (3)158
C13—H13···O2ii0.932.603.257 (4)128
C19—H19···O1iii0.932.573.373 (4)145
C20—H20···Cg4iv0.932.993.853 (4)156
Table 1

Hydrogen-bond geometry (, )

Cg4 is the centroid of the C12C17 ring.

DHA DHHA D A DHA
N1H1O10.861.872.550(3)134
N3H3AS1i 0.862.883.729(2)168
N3H3AO2i 0.862.443.131(3)138
N3H3AN2i 0.862.132.943(3)158
C13H13O2ii 0.932.603.257(4)128
C19H19O1iii 0.932.573.373(4)145
C20H20Cg4iv 0.932.993.853(4)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-[4-(Diamino-methyl-eneamino-sulfon-yl)phenyl-iminiometh-yl]-2-naphtholate N,N-dimethyl-formamide disolvate.

Authors:  Hoda El-Ghamry; Raafat Issa; Kamal El-Baradie; Keiko Isagai; Shigeyuki Masaoka; Ken Sakai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28

3.  N-(2,3-Dihydro-1,3-thia-zol-2-yl-idene)-4-[(2-hydroxy-benzyl-idene)amino]benzene-sulfonamide.

Authors:  Xin-Li Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

5.  1-[4-({4-[(E)-(2-Hy-droxy-naphthalen-1-yl)methyl-idene-amino]-phen-yl}sulfan-yl)phen-yl]ethanone.

Authors:  Rabihe Hebbachi; Hénia Mousser; Abdelhamid Mousser
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-12

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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