Literature DB >> 23476448

1-[4-({4-[(E)-(2-Hy-droxy-naphthalen-1-yl)methyl-idene-amino]-phen-yl}sulfan-yl)phen-yl]ethanone.

Rabihe Hebbachi1, Hénia Mousser, Abdelhamid Mousser.   

Abstract

The title Schiff base compound, C25H19NO2S, crystallizes in a statistically disordered structure comprising keto and enol tautomeric forms. In the enol form, the benzenoid arrangment is promoted by a strong intra-molecular O-H⋯N hydrogen bond and adopts an E conformation about the imine bond. In the keto form there is an intramolecular N-H⋯O hydrogen bond. In the crystal, an extended network of C-H⋯O hydrogen bonds stabilizes columns parallel to the c axis, forming large voids (there are four cavities of 108 Å(3) per unit cell) with highly disordered residual electron density. The SQUEEZE procedure in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155] was used to eliminate the contribution of this electron density from the intensity data, and the solvent-free model was employed for the final refinement. The contribution of this undetermined solvent was ignored in the calculation of the unit-cell characteristics.

Entities:  

Year:  2012        PMID: 23476448      PMCID: PMC3588383          DOI: 10.1107/S1600536812049835

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Blagus & Kaitner (2011 ▶); Farag et al. (2010 ▶); Venkatachalam et al. (2011 ▶). For background to Schiff bases and their applications, see: Li et al. (2003 ▶); Villar et al. (2004 ▶); Kagkelari et al. (2009 ▶); Ourari et al. (2008 ▶); Zidane et al. (2011 ▶).

Experimental

Crystal data

C25H19NO2S M = 397.47 Monoclinic, a = 10.695 (3) Å b = 44.458 (14) Å c = 4.4437 (11) Å β = 99.004 (9)° V = 2086.8 (10) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 150 K 0.58 × 0.17 × 0.06 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.898, T max = 0.990 8026 measured reflections 3680 independent reflections 2952 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.125 S = 0.98 3680 reflections 263 parameters 2 restraints H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1291 Friedel pairs Flack parameter: −0.06 (10) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049835/tk5178sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049835/tk5178Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812049835/tk5178Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H19NO2SF(000) = 832
Mr = 397.47Dx = 1.265 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1817 reflections
a = 10.695 (3) Åθ = 2.4–26.0°
b = 44.458 (14) ŵ = 0.18 mm1
c = 4.4437 (11) ÅT = 150 K
β = 99.004 (9)°Stick, orange
V = 2086.8 (10) Å30.58 × 0.17 × 0.06 mm
Z = 4
Bruker APEXII diffractometer2952 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS, Sheldrick, 2002)h = −12→13
Tmin = 0.898, Tmax = 0.990k = −57→57
8026 measured reflectionsl = −4→5
3680 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.125w = 1/[σ2(Fo2) + (0.0718P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max = 0.005
3680 reflectionsΔρmax = 0.24 e Å3
263 parametersΔρmin = −0.22 e Å3
2 restraintsAbsolute structure: Flack (1983), 1291 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.06 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Since hydrogen is not very well localized between N13 and O1, the structure is described as the presence of two tautomers. Hydrogen is bonded to O1 in the first one (part A) and to N13 in the second (part B). This disorder was modeled by refining part A (except H on N13) and part B (except H on O1) with equivalence of N13 and central phenyl ring (C14 to C19) atoms.
xyzUiso*/UeqOcc. (<1)
O1A0.9261 (2)0.89274 (5)0.2227 (5)0.0432 (6)0.5
H1A0.88040.87810.25480.065*0.5
O1B0.9261 (2)0.89274 (5)0.2227 (5)0.0432 (6)0.5
C20.8665 (3)0.90927 (7)0.0128 (7)0.0343 (7)
C30.9267 (3)0.93567 (7)−0.0798 (8)0.0404 (8)
H31.00960.94050.01870.048*
C40.8695 (3)0.95396 (7)−0.3033 (8)0.0404 (8)
H40.91350.9711−0.35940.048*
C50.7436 (3)0.94802 (7)−0.4576 (7)0.0339 (7)
C60.6843 (4)0.96779 (7)−0.6875 (8)0.0402 (8)
H60.72910.9849−0.74080.048*
C70.5643 (3)0.96264 (7)−0.8334 (7)0.0423 (9)
H70.52530.9761−0.98620.051*
C80.4992 (4)0.93702 (8)−0.7531 (7)0.0408 (8)
H80.41550.9332−0.8530.049*
C90.5551 (3)0.91739 (7)−0.5316 (8)0.0357 (7)
H90.50920.9003−0.48250.043*
C100.6785 (3)0.92219 (6)−0.3773 (7)0.0317 (7)
C110.7411 (3)0.90245 (6)−0.1401 (7)0.0306 (7)
C120.6792 (3)0.87685 (7)−0.0513 (7)0.0321 (7)
H120.59630.8725−0.1530.039*
N13A0.7319 (3)0.85845 (5)0.1698 (6)0.0320 (6)0.5
C14A0.6753 (3)0.83248 (6)0.2696 (7)0.0285 (6)0.5
C15A0.7471 (3)0.81538 (7)0.4960 (7)0.0325 (7)0.5
H15A0.83060.82160.57760.039*0.5
C16A0.6980 (3)0.78934 (7)0.6035 (7)0.0343 (7)0.5
H16A0.74670.77820.76260.041*0.5
C17A0.5781 (3)0.77958 (6)0.4798 (7)0.0296 (7)0.5
C18A0.5070 (3)0.79663 (7)0.2544 (7)0.0324 (7)0.5
H18A0.42420.79010.17060.039*0.5
C19A0.5541 (3)0.82303 (7)0.1483 (7)0.0345 (7)0.5
H19A0.5040.8345−0.00580.041*0.5
N13B0.7319 (3)0.85845 (5)0.1698 (6)0.0320 (6)0.5
H13B0.80870.86290.26110.038*0.5
C14B0.6753 (3)0.83248 (6)0.2696 (7)0.0285 (6)0.5
C15B0.7471 (3)0.81538 (7)0.4960 (7)0.0325 (7)0.5
H15B0.83060.82160.57760.039*0.5
C16B0.6980 (3)0.78934 (7)0.6035 (7)0.0343 (7)0.5
H16B0.74670.77820.76260.041*0.5
C17B0.5781 (3)0.77958 (6)0.4798 (7)0.0296 (7)0.5
C18B0.5070 (3)0.79663 (7)0.2544 (7)0.0324 (7)0.5
H18B0.42420.79010.17060.039*0.5
C19B0.5541 (3)0.82303 (7)0.1483 (7)0.0345 (7)0.5
H19B0.5040.8345−0.00580.041*0.5
S10.50675 (10)0.747532 (16)0.62296 (19)0.0362 (2)
C200.5814 (3)0.71639 (6)0.4809 (7)0.0288 (7)
C210.5376 (3)0.68797 (7)0.5525 (7)0.0342 (7)
H210.470.68640.66740.041*
C220.5921 (3)0.66202 (7)0.4567 (7)0.0344 (7)
H220.56080.64290.50510.041*
C230.6915 (3)0.66362 (7)0.2916 (7)0.0309 (7)
C240.7347 (3)0.69227 (7)0.2182 (7)0.0317 (7)
H240.80240.69380.10380.038*
C250.6800 (3)0.71807 (7)0.3103 (7)0.0305 (7)
H250.70980.73720.2570.037*
C260.7554 (3)0.63638 (7)0.1932 (8)0.0367 (8)
C270.7015 (4)0.60589 (7)0.2401 (9)0.0474 (9)
H27A0.75460.59040.16710.071*
H27B0.61540.60460.12640.071*
H27C0.69920.60280.45760.071*
O280.8519 (3)0.63891 (6)0.0759 (6)0.0530 (7)
U11U22U33U12U13U23
O1A0.0444 (14)0.0349 (12)0.0494 (16)0.0022 (10)0.0045 (11)−0.0044 (10)
O1B0.0444 (14)0.0349 (12)0.0494 (16)0.0022 (10)0.0045 (11)−0.0044 (10)
C20.044 (2)0.0286 (16)0.032 (2)0.0051 (14)0.0121 (14)−0.0093 (13)
C30.0406 (19)0.0355 (17)0.047 (2)−0.0029 (15)0.0120 (16)−0.0151 (15)
C40.048 (2)0.0319 (16)0.046 (2)−0.0078 (15)0.0241 (17)−0.0102 (15)
C50.048 (2)0.0278 (15)0.0299 (19)−0.0021 (14)0.0177 (14)−0.0072 (12)
C60.064 (2)0.0293 (16)0.0320 (19)−0.0051 (15)0.0218 (16)−0.0041 (13)
C70.061 (2)0.0339 (17)0.033 (2)−0.0001 (16)0.0109 (17)0.0036 (14)
C80.049 (2)0.0396 (18)0.034 (2)0.0013 (15)0.0062 (16)−0.0023 (14)
C90.048 (2)0.0294 (15)0.0310 (18)−0.0037 (14)0.0092 (14)−0.0008 (13)
C100.0457 (19)0.0240 (13)0.0287 (18)−0.0010 (13)0.0159 (14)−0.0066 (12)
C110.0410 (18)0.0249 (14)0.0279 (17)−0.0011 (13)0.0112 (13)−0.0068 (12)
C120.0397 (18)0.0296 (15)0.0279 (18)0.0039 (13)0.0082 (13)−0.0055 (12)
N13A0.0375 (14)0.0286 (13)0.0308 (15)0.0022 (11)0.0082 (11)−0.0019 (11)
C14A0.0362 (17)0.0263 (14)0.0248 (17)0.0041 (12)0.0101 (12)−0.0052 (12)
C15A0.0359 (18)0.0332 (16)0.0278 (19)0.0001 (13)0.0034 (13)−0.0021 (12)
C16A0.0368 (18)0.0370 (17)0.0284 (19)0.0042 (14)0.0029 (14)0.0051 (13)
C17A0.0358 (18)0.0267 (14)0.0270 (18)0.0034 (12)0.0069 (13)0.0017 (12)
C18A0.0342 (17)0.0327 (16)0.0312 (19)0.0045 (13)0.0078 (13)−0.0033 (12)
C19A0.0403 (18)0.0311 (16)0.0311 (19)0.0048 (13)0.0030 (14)0.0036 (13)
N13B0.0375 (14)0.0286 (13)0.0308 (15)0.0022 (11)0.0082 (11)−0.0019 (11)
C14B0.0362 (17)0.0263 (14)0.0248 (17)0.0041 (12)0.0101 (12)−0.0052 (12)
C15B0.0359 (18)0.0332 (16)0.0278 (19)0.0001 (13)0.0034 (13)−0.0021 (12)
C16B0.0368 (18)0.0370 (17)0.0284 (19)0.0042 (14)0.0029 (14)0.0051 (13)
C17B0.0358 (18)0.0267 (14)0.0270 (18)0.0034 (12)0.0069 (13)0.0017 (12)
C18B0.0342 (17)0.0327 (16)0.0312 (19)0.0045 (13)0.0078 (13)−0.0033 (12)
C19B0.0403 (18)0.0311 (16)0.0311 (19)0.0048 (13)0.0030 (14)0.0036 (13)
S10.0411 (4)0.0342 (4)0.0357 (5)0.0028 (4)0.0138 (3)0.0048 (4)
C200.0311 (16)0.0305 (15)0.0233 (18)0.0001 (12)−0.0005 (12)0.0028 (12)
C210.0350 (18)0.0354 (17)0.033 (2)−0.0023 (13)0.0092 (13)0.0063 (13)
C220.0394 (18)0.0310 (16)0.0326 (19)−0.0070 (13)0.0047 (14)0.0037 (13)
C230.0325 (17)0.0294 (15)0.0297 (18)−0.0039 (12)0.0018 (13)0.0025 (12)
C240.0325 (17)0.0331 (16)0.0296 (19)−0.0035 (13)0.0049 (13)0.0028 (13)
C250.0337 (17)0.0284 (15)0.0297 (18)−0.0010 (12)0.0062 (13)0.0047 (12)
C260.0362 (19)0.0362 (17)0.035 (2)0.0004 (14)−0.0013 (14)0.0015 (14)
C270.052 (2)0.0334 (17)0.057 (3)0.0055 (16)0.0088 (17)0.0002 (16)
O280.0506 (16)0.0421 (14)0.0705 (18)0.0027 (12)0.0222 (13)−0.0073 (13)
O1A—C21.277 (4)C15A—H15A0.95
O1A—H1A0.84C16A—C17A1.383 (5)
C2—C31.429 (4)C16A—H16A0.95
C2—C111.438 (5)C17A—C18A1.385 (4)
C3—C41.354 (5)C17A—S11.780 (3)
C3—H30.95C18A—C19A1.389 (4)
C4—C51.437 (5)C18A—H18A0.95
C4—H40.95C19A—H19A0.95
C5—C101.417 (4)S1—C201.764 (3)
C5—C61.420 (5)C20—C251.394 (4)
C6—C71.363 (5)C20—C211.401 (4)
C6—H60.95C21—C221.389 (4)
C7—C81.410 (5)C21—H210.95
C7—H70.95C22—C231.385 (5)
C8—C91.380 (5)C22—H220.95
C8—H80.95C23—C241.410 (4)
C9—C101.404 (5)C23—C261.489 (4)
C9—H90.95C24—C251.378 (4)
C10—C111.453 (4)C24—H240.95
C11—C121.404 (4)C25—H250.95
C12—N13A1.334 (4)C26—O281.232 (4)
C12—H120.95C26—C271.500 (4)
N13A—C14A1.407 (4)C27—H27A0.98
C14A—C19A1.388 (4)C27—H27B0.98
C14A—C15A1.393 (5)C27—H27C0.98
C15A—C16A1.387 (4)
C2—O1A—H1A109.5C17A—C16A—C15A120.2 (3)
O1A—C2—C3119.1 (3)C17A—C16A—H16A119.9
O1A—C2—C11123.1 (3)C15A—C16A—H16A119.9
C3—C2—C11117.8 (3)C16A—C17A—C18A119.1 (3)
C4—C3—C2122.1 (3)C16A—C17A—S1122.1 (2)
C4—C3—H3118.9C18A—C17A—S1118.6 (2)
C2—C3—H3118.9C17A—C18A—C19A121.3 (3)
C3—C4—C5121.5 (3)C17A—C18A—H18A119.3
C3—C4—H4119.3C19A—C18A—H18A119.3
C5—C4—H4119.3C18A—C19A—C14A119.4 (3)
C10—C5—C6120.1 (3)C18A—C19A—H19A120.3
C10—C5—C4119.3 (3)C14A—C19A—H19A120.3
C6—C5—C4120.6 (3)C20—S1—C17A104.88 (15)
C7—C6—C5121.3 (3)C25—C20—C21118.7 (3)
C7—C6—H6119.4C25—C20—S1125.2 (2)
C5—C6—H6119.4C21—C20—S1116.1 (2)
C6—C7—C8118.7 (3)C22—C21—C20120.5 (3)
C6—C7—H7120.6C22—C21—H21119.8
C8—C7—H7120.6C20—C21—H21119.8
C9—C8—C7121.0 (3)C23—C22—C21120.9 (3)
C9—C8—H8119.5C23—C22—H22119.5
C7—C8—H8119.5C21—C22—H22119.5
C8—C9—C10121.4 (3)C22—C23—C24118.3 (3)
C8—C9—H9119.3C22—C23—C26122.6 (3)
C10—C9—H9119.3C24—C23—C26119.0 (3)
C9—C10—C5117.5 (3)C25—C24—C23120.9 (3)
C9—C10—C11123.6 (3)C25—C24—H24119.5
C5—C10—C11118.9 (3)C23—C24—H24119.5
C12—C11—C2119.0 (3)C24—C25—C20120.6 (3)
C12—C11—C10120.6 (3)C24—C25—H25119.7
C2—C11—C10120.4 (3)C20—C25—H25119.7
N13A—C12—C11122.7 (3)O28—C26—C23120.2 (3)
N13A—C12—H12118.7O28—C26—C27120.4 (3)
C11—C12—H12118.7C23—C26—C27119.3 (3)
C12—N13A—C14A125.6 (3)C26—C27—H27A109.5
C19A—C14A—C15A119.4 (3)C26—C27—H27B109.5
C19A—C14A—N13A123.2 (3)H27A—C27—H27B109.5
C15A—C14A—N13A117.4 (3)C26—C27—H27C109.5
C16A—C15A—C14A120.6 (3)H27A—C27—H27C109.5
C16A—C15A—H15A119.7H27B—C27—H27C109.5
C14A—C15A—H15A119.7
O1A—C2—C3—C4179.2 (3)C19A—C14A—C15A—C16A−0.9 (5)
C11—C2—C3—C40.0 (4)N13A—C14A—C15A—C16A−179.4 (3)
C2—C3—C4—C50.9 (5)C14A—C15A—C16A—C17A2.0 (5)
C3—C4—C5—C10−0.9 (5)C15A—C16A—C17A—C18A−1.9 (5)
C3—C4—C5—C6178.8 (3)C15A—C16A—C17A—S1−176.4 (2)
C10—C5—C6—C70.6 (5)C16A—C17A—C18A—C19A0.8 (5)
C4—C5—C6—C7−179.2 (3)S1—C17A—C18A—C19A175.5 (2)
C5—C6—C7—C8−0.3 (5)C17A—C18A—C19A—C14A0.3 (5)
C6—C7—C8—C9−0.1 (5)C15A—C14A—C19A—C18A−0.2 (5)
C7—C8—C9—C100.2 (5)N13A—C14A—C19A—C18A178.1 (3)
C8—C9—C10—C50.0 (5)C16A—C17A—S1—C20−76.5 (3)
C8—C9—C10—C11179.2 (3)C18A—C17A—S1—C20109.0 (3)
C6—C5—C10—C9−0.4 (4)C17A—S1—C20—C253.5 (3)
C4—C5—C10—C9179.4 (3)C17A—S1—C20—C21−177.5 (2)
C6—C5—C10—C11−179.7 (3)C25—C20—C21—C220.4 (4)
C4—C5—C10—C110.1 (4)S1—C20—C21—C22−178.6 (3)
O1A—C2—C11—C121.6 (4)C20—C21—C22—C230.7 (5)
C3—C2—C11—C12−179.3 (3)C21—C22—C23—C24−1.1 (4)
O1A—C2—C11—C10−180.0 (3)C21—C22—C23—C26178.0 (3)
C3—C2—C11—C10−0.8 (4)C22—C23—C24—C250.5 (4)
C9—C10—C11—C120.0 (5)C26—C23—C24—C25−178.7 (3)
C5—C10—C11—C12179.2 (3)C23—C24—C25—C200.6 (4)
C9—C10—C11—C2−178.5 (3)C21—C20—C25—C24−1.1 (4)
C5—C10—C11—C20.8 (4)S1—C20—C25—C24177.9 (2)
C2—C11—C12—N13A−0.1 (4)C22—C23—C26—O28−172.1 (3)
C10—C11—C12—N13A−178.5 (3)C24—C23—C26—O287.0 (4)
C11—C12—N13A—C14A−180.0 (3)C22—C23—C26—C277.5 (5)
C12—N13A—C14A—C19A−0.8 (5)C24—C23—C26—C27−173.4 (3)
C12—N13A—C14A—C15A177.5 (3)
D—H···AD—HH···AD···AD—H···A
O1A—H1A···N13A0.841.802.558 (4)149
N13B—H13B···O1B0.881.852.558 (4)136
C9—H9···O28i0.952.46 (1)3.398 (4)168
C19A—H19A···O28i0.952.56 (1)3.506 (4)174
C22—H22···O1Aii0.952.44 (1)3.337 (4)157
C27—H27B···O1Ai0.982.49 (1)3.442 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1A—H1A⋯N13A 0.841.802.558 (4)149
N13B—H13B⋯O1B 0.881.852.558 (4)136
C9—H9⋯O28i 0.952.46 (1)3.398 (4)168
C19A—H19A⋯O28i 0.952.56 (1)3.506 (4)174
C22—H22⋯O1A ii 0.952.44 (1)3.337 (4)157
C27—H27B⋯O1A i 0.982.49 (1)3.442 (4)164

Symmetry codes: (i) ; (ii) .

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