Literature DB >> 26088328

Post-transcriptional regulation in corticogenesis: how RNA-binding proteins help build the brain.

Louis-Jan Pilaz1, Debra L Silver1,2,3,4.   

Abstract

The cerebral cortex, the brain structure responsible for our higher cognitive functions, is built during embryonic development in a process called corticogenesis. During corticogenesis, neural stem cells generate distinct populations of progenitors and excitatory neurons. These new neurons migrate radially in the cortex, eventually forming neuronal layers and establishing synaptic connections with other neurons both within and outside the cortex. Perturbations to corticogenesis can result in severe neurodevelopmental disorders, thus emphasizing the need to better understand molecular regulation of brain development. Recent studies in both model organisms and humans have collectively highlighted roles for post-transcriptional regulation in virtually all steps of corticogenesis. Genomic approaches have revealed global RNA changes associated with spatial and temporal regulation of cortical development. Additionally, genetic studies have uncovered RNA-binding proteins (RBPs) critical for cell proliferation, differentiation, and migration within the developing neocortex. Many of these same RBPs play causal roles in neurodevelopmental pathologies. In the developing neocortex, RBPs influence diverse steps of mRNA metabolism, including splicing, stability, translation, and localization. With the advent of new technologies, researchers have begun to uncover key transcripts regulated by these RBPs. Given the complexity of the developing mammalian cortex, a major challenge for the future will be to understand how dynamic RNA regulation occurs within heterogeneous cell populations, across space and time. In sum, post-transcriptional regulation has emerged as a critical mechanism for driving corticogenesis and exciting direction of future research.
© 2015 Wiley Periodicals, Inc.

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Year:  2015        PMID: 26088328      PMCID: PMC4624281          DOI: 10.1002/wrna.1289

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  89 in total

1.  Pax6, Tbr2, and Tbr1 are expressed sequentially by radial glia, intermediate progenitor cells, and postmitotic neurons in developing neocortex.

Authors:  Chris Englund; Andy Fink; Charmaine Lau; Diane Pham; Ray A M Daza; Alessandro Bulfone; Tom Kowalczyk; Robert F Hevner
Journal:  J Neurosci       Date:  2005-01-05       Impact factor: 6.167

2.  Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing.

Authors:  Albert E Ayoub; Sunghee Oh; Yanhua Xie; Jing Leng; Justin Cotney; Martin H Dominguez; James P Noonan; Pasko Rakic
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-22       Impact factor: 11.205

3.  RNA-binding protein Musashi family: roles for CNS stem cells and a subpopulation of ependymal cells revealed by targeted disruption and antisense ablation.

Authors:  Shin-ichi Sakakibara; Yuki Nakamura; Tetsu Yoshida; Shinsuke Shibata; Masato Koike; Hiroshi Takano; Shuichi Ueda; Yasuo Uchiyama; Tetsuo Noda; Hideyuki Okano
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-29       Impact factor: 11.205

Review 4.  In the right place at the right time: visualizing and understanding mRNA localization.

Authors:  Adina R Buxbaum; Gal Haimovich; Robert H Singer
Journal:  Nat Rev Mol Cell Biol       Date:  2014-12-30       Impact factor: 94.444

Review 5.  Evolution of SR protein and hnRNP splicing regulatory factors.

Authors:  Anke Busch; Klemens J Hertel
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-02       Impact factor: 9.957

6.  Slit/Robo signaling modulates the proliferation of central nervous system progenitors.

Authors:  Víctor Borrell; Adrián Cárdenas; Gabriele Ciceri; Joan Galcerán; Nuria Flames; Ramón Pla; Sandrina Nóbrega-Pereira; Cristina García-Frigola; Sandra Peregrín; Zhen Zhao; Le Ma; Marc Tessier-Lavigne; Oscar Marín
Journal:  Neuron       Date:  2012-10-17       Impact factor: 17.173

Review 7.  Regulation of the postsynaptic cytoskeleton: roles in development, plasticity, and disorders.

Authors:  Tatyana Svitkina; Wan-Hsin Lin; Donna J Webb; Ryohei Yasuda; Gary A Wayman; Linda Van Aelst; Scott H Soderling
Journal:  J Neurosci       Date:  2010-11-10       Impact factor: 6.167

8.  DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex.

Authors:  Bradley J Molyneaux; Loyal A Goff; Andrea C Brettler; Hsu-Hsin Chen; Siniša Hrvatin; John L Rinn; Paola Arlotta
Journal:  Neuron       Date:  2014-12-31       Impact factor: 17.173

9.  Stabilization of Dll1 mRNA by Elavl1/HuR in neuroepithelial cells undergoing mitosis.

Authors:  Daniel J García-Domínguez; Dominique Morello; Elsa Cisneros; Dimitris L Kontoyiannis; José M Frade
Journal:  Mol Biol Cell       Date:  2011-02-23       Impact factor: 4.138

10.  PSD-95 promotes synaptogenesis and multiinnervated spine formation through nitric oxide signaling.

Authors:  Irina Nikonenko; Bernadett Boda; Sylvain Steen; Graham Knott; Egbert Welker; Dominique Muller
Journal:  J Cell Biol       Date:  2008-12-15       Impact factor: 10.539

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  29 in total

Review 1.  The frontier of RNA metamorphosis and ribosome signature in neocortical development.

Authors:  Matthew L Kraushar; Tatiana Popovitchenko; Nicole L Volk; Mladen-Roko Rasin
Journal:  Int J Dev Neurosci       Date:  2016-05-27       Impact factor: 2.457

2.  Widespread Translational Remodeling during Human Neuronal Differentiation.

Authors:  John D Blair; Dirk Hockemeyer; Jennifer A Doudna; Helen S Bateup; Stephen N Floor
Journal:  Cell Rep       Date:  2017-11-14       Impact factor: 9.423

3.  Identification of neural stem cell differentiation repressor complex Pnky-PTBP1.

Authors:  Ioannis Grammatikakis; Myriam Gorospe
Journal:  Stem Cell Investig       Date:  2016-04-07

Review 4.  Alternative splicing as a regulator of development and tissue identity.

Authors:  Francisco E Baralle; Jimena Giudice
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-10       Impact factor: 94.444

Review 5.  Brain Disorders and Chemical Pollutants: A Gap Junction Link?

Authors:  Marc Mesnil; Norah Defamie; Christian Naus; Denis Sarrouilhe
Journal:  Biomolecules       Date:  2020-12-31

6.  Sequence-Based Prediction of RNA-Binding Residues in Proteins.

Authors:  Rasna R Walia; Yasser El-Manzalawy; Vasant G Honavar; Drena Dobbs
Journal:  Methods Mol Biol       Date:  2017

Review 7.  Roles for RNA-binding proteins in development and disease.

Authors:  Amy E Brinegar; Thomas A Cooper
Journal:  Brain Res       Date:  2016-03-10       Impact factor: 3.252

8.  Prolonged Mitosis of Neural Progenitors Alters Cell Fate in the Developing Brain.

Authors:  Louis-Jan Pilaz; John J McMahon; Emily E Miller; Ashley L Lennox; Aussie Suzuki; Edward Salmon; Debra L Silver
Journal:  Neuron       Date:  2016-01-06       Impact factor: 17.173

Review 9.  RNA-binding proteins, neural development and the addictions.

Authors:  C D Bryant; N Yazdani
Journal:  Genes Brain Behav       Date:  2016-01       Impact factor: 3.449

Review 10.  The exon junction complex in neural development and neurodevelopmental disease.

Authors:  J J McMahon; E E Miller; D L Silver
Journal:  Int J Dev Neurosci       Date:  2016-04-09       Impact factor: 2.457

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