Literature DB >> 26087479

Monte Carlo simulations of fluid vesicles.

K K Sreeja1, John H Ipsen, P B Sunil Kumar.   

Abstract

Lipid vesicles are closed two dimensional fluid surfaces that are studied extensively as model systems for understanding the physical properties of biological membranes. Here we review the recent developments in the Monte Carlo techniques for simulating fluid vesicles and discuss some of their applications. The technique, which treats the membrane as an elastic sheet, is most suitable for the study of large scale conformations of membranes. The model can be used to study vesicles with fixed and varying topologies. Here we focus on the case of multi-component membranes with the local lipid and protein composition coupled to the membrane curvature leading to a variety of shapes. The phase diagram is more intriguing in the case of fluid vesicles having an in-plane orientational order that induce anisotropic directional curvatures. Methods to explore the steady state morphological structures due to active flux of materials have also been described in the context of Monte Carlo simulations.

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Year:  2015        PMID: 26087479     DOI: 10.1088/0953-8984/27/27/273104

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  9 in total

Review 1.  Multiscale simulations of protein-facilitated membrane remodeling.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Struct Biol       Date:  2016-06-17       Impact factor: 2.867

2.  Nonaxisymmetric Shapes of Biological Membranes from Locally Induced Curvature.

Authors:  Yannick A D Omar; Amaresh Sahu; Roger A Sauer; Kranthi K Mandadapu
Journal:  Biophys J       Date:  2020-07-31       Impact factor: 4.033

3.  Conformations of a charged vesicle interacting with an oppositely charged particle.

Authors:  Hua Duan; Jianfeng Li; Hongdong Zhang; Feng Qiu; Yuliang Yang
Journal:  J Biol Phys       Date:  2017-10-10       Impact factor: 1.365

4.  The mesoscopic membrane with proteins (MesM-P) model.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Chem Phys       Date:  2017-07-28       Impact factor: 3.488

5.  Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.

Authors:  N Ramakrishnan; Ryan P Bradley; Richard W Tourdot; Ravi Radhakrishnan
Journal:  J Phys Condens Matter       Date:  2018-05-22       Impact factor: 2.333

6.  A Review of Mechanics-Based Mesoscopic Membrane Remodeling Methods: Capturing Both the Physics and the Chemical Diversity.

Authors:  Gaurav Kumar; Satya Chaithanya Duggisetty; Anand Srivastava
Journal:  J Membr Biol       Date:  2022-10-05       Impact factor: 2.426

7.  Synaptotagmin rings as high-sensitivity regulators of synaptic vesicle docking and fusion.

Authors:  Jie Zhu; Zachary A McDargh; Feng Li; Shyam S Krishnakumar; James E Rothman; Ben O'Shaughnessy
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-14       Impact factor: 12.779

8.  Pollen wall patterns as a model for biological self-assembly.

Authors:  Asja Radja
Journal:  J Exp Zool B Mol Dev Evol       Date:  2020-09-29       Impact factor: 2.368

Review 9.  Modeling Membrane Curvature Generation due to Membrane⁻Protein Interactions.

Authors:  Haleh Alimohamadi; Padmini Rangamani
Journal:  Biomolecules       Date:  2018-10-23
  9 in total

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