Literature DB >> 26085609

Whole-Genome Sequencing Data for Serotyping Escherichia coli-It's Time for a Change!

Claire Jenkins1.   

Abstract

The accessibility of whole-genome sequencing (WGS) presents the opportunity for national reference laboratories to provide a state-of-the-art public health surveillance service. The replacement of traditional serology-based typing of Escherichia coli by WGS is supported by user-friendly, freely available data analysis Web tools. An article in this issue of the Journal of Clinical Microbiology (K. G. Joensen, A. M. M. Tetzschner, A. Iguchi, F. M. Aarestrup, and F. Scheutz, J Clin Microbiol, 53:2410-2426, 2015, http://dx.doi.org/10.1128/JCM.00008-15) describes SerotypeFinder, an essential guide to serotyping E. coli in the 21st century.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID： 26085609      PMCID： PMC4508412          DOI： 10.1128/JCM.01448-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  11 in total

1.  Association of putative pathogenicity genes with adherence characteristics and fimbrial genotypes in typical enteroaggregative Escherichia coli from patients with and without diarrhoea in the United Kingdom.

Authors:  C Jenkins; H Chart; G A Willshaw; T Cheasty; D S Tompkins
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2007-12       Impact factor: 3.267

2.  The serology of the coli group.

Authors:  F KAUFFMANN
Journal:  J Immunol       Date:  1947-09       Impact factor: 5.422

3.  Public Health Investigation of Two Outbreaks of Shiga Toxin-Producing Escherichia coli O157 Associated with Consumption of Watercress.

Authors:  Claire Jenkins; Timothy J Dallman; Naomi Launders; Caroline Willis; Lisa Byrne; Frieda Jorgensen; Mark Eppinger; Goutam K Adak; Heather Aird; Nicola Elviss; Kathie A Grant; Dilys Morgan; Jim McLauchlin
Journal:  Appl Environ Microbiol       Date:  2015-04-03       Impact factor: 4.792

4.  Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157.

Authors:  Timothy J Dallman; Lisa Byrne; Philip M Ashton; Lauren A Cowley; Neil T Perry; Goutam Adak; Liljana Petrovska; Richard J Ellis; Richard Elson; Anthony Underwood; Jonathan Green; William P Hanage; Claire Jenkins; Kathie Grant; John Wain
Journal:  Clin Infect Dis       Date:  2015-04-17       Impact factor: 9.079

5.  Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data.

Authors:  Katrine G Joensen; Anna M M Tetzschner; Atsushi Iguchi; Frank M Aarestrup; Flemming Scheutz
Journal:  J Clin Microbiol       Date:  2015-05-13       Impact factor: 5.948

6.  Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany.

Authors:  David A Rasko; Dale R Webster; Jason W Sahl; Ali Bashir; Nadia Boisen; Flemming Scheutz; Ellen E Paxinos; Robert Sebra; Chen-Shan Chin; Dimitris Iliopoulos; Aaron Klammer; Paul Peluso; Lawrence Lee; Andrey O Kislyuk; James Bullard; Andrew Kasarskis; Susanna Wang; John Eid; David Rank; Julia C Redman; Susan R Steyert; Jakob Frimodt-Møller; Carsten Struve; Andreas M Petersen; Karen A Krogfelt; James P Nataro; Eric E Schadt; Matthew K Waldor
Journal:  N Engl J Med       Date:  2011-07-27       Impact factor: 91.245

7.  Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.

Authors:  Katrine Grimstrup Joensen; Flemming Scheutz; Ole Lund; Henrik Hasman; Rolf S Kaas; Eva M Nielsen; Frank M Aarestrup
Journal:  J Clin Microbiol       Date:  2014-02-26       Impact factor: 5.948

8.  The utility and public health implications of PCR and whole genome sequencing for the detection and investigation of an outbreak of Shiga toxin-producing Escherichia coli serogroup O26:H11.

Authors:  T J Dallman; L Byrne; N Launders; K Glen; K A Grant; C Jenkins
Journal:  Epidemiol Infect       Date:  2014-10-15       Impact factor: 4.434

9.  Genetical and functional investigation of fliC genes encoding flagellar serotype H4 in wildtype strains of Escherichia coli and in a laboratory E. coli K-12 strain expressing flagellar antigen type H48.

Authors:  Lothar Beutin; Eckhard Strauch; Sonja Zimmermann; Stefan Kaulfuss; Christoph Schaudinn; Andrea Männel; Hans R Gelderblom
Journal:  BMC Microbiol       Date:  2005-01-24       Impact factor: 3.605

10.  A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster.

Authors:  Atsushi Iguchi; Sunao Iyoda; Taisei Kikuchi; Yoshitoshi Ogura; Keisuke Katsura; Makoto Ohnishi; Tetsuya Hayashi; Nicholas R Thomson
Journal:  DNA Res       Date:  2014-11-26       Impact factor: 4.458
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  5 in total

1.  Molecular Prediction of the O157:H-Negative Phenotype Prevalent in Australian Shiga Toxin-Producing Escherichia coli Cases Improves Concordance of In Silico Serotyping with Phenotypic Motility.

Authors:  Alexander P Pintara; Christine J D Guglielmino; Irani U Rathnayake; Flavia Huygens; Amy V Jennison
Journal:  J Clin Microbiol       Date:  2018-03-26       Impact factor: 5.948

2.  In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages.

Authors:  Danielle J Ingle; Mary Valcanis; Alex Kuzevski; Marija Tauschek; Michael Inouye; Tim Stinear; Myron M Levine; Roy M Robins-Browne; Kathryn E Holt
Journal:  Microb Genom       Date:  2016-07-11

3.  Phylotyper: in silico predictor of gene subtypes.

Authors:  Matthew D Whiteside; Victor P J Gannon; Chad R Laing
Journal:  Bioinformatics       Date:  2017-11-15       Impact factor: 6.937

4.  Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia.

Authors:  Danielle J Ingle; Anders Gonçalves da Silva; Mary Valcanis; Susan A Ballard; Torsten Seemann; Amy V Jennison; Ivan Bastian; Rolf Wise; Martyn D Kirk; Benjamin P Howden; Deborah A Williamson
Journal:  Microb Genom       Date:  2019-05-20

5.  Whole-Genome-Based Public Health Surveillance of Less Common Shiga Toxin-Producing Escherichia coli Serovars and Untypeable Strains Identifies Four Novel O Genotypes.

Authors:  Christina Lang; Miriam Hiller; Regina Konrad; Angelika Fruth; Antje Flieger
Journal:  J Clin Microbiol       Date:  2019-09-24       Impact factor: 5.948
  5 in total

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