Literature DB >> 26079926

XL-MS: Protein cross-linking coupled with mass spectrometry.

Andrew N Holding1.   

Abstract

With the continuing trend to study larger and more complex systems, the application of protein cross-linking coupled with mass spectrometry (XL-MS) provides a varied toolkit perfectly suited to achieve these goals. By freezing the transient interactions through the formation of covalent bonds, XL-MS provides a vital insight into both the structure and organization of proteins in a wide variety of conditions. This review covers some of the established methods that underpin the field alongside the more recent developments that hold promise to further realize its potential in new directions.
Copyright © 2015 The Author. Published by Elsevier Inc. All rights reserved.

Keywords:  Cross-linking; Mass spectrometry; Proteomics; Quantitation; Structure; Systems biology; XL-MS

Mesh:

Substances:

Year:  2015        PMID: 26079926     DOI: 10.1016/j.ymeth.2015.06.010

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  38 in total

1.  Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies.

Authors:  Andrew Keller; Juan D Chavez; Kevin C Felt; James E Bruce
Journal:  J Proteome Res       Date:  2019-07-17       Impact factor: 4.466

2.  Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers.

Authors:  Xuefei Zhong; Arti T Navare; Juan D Chavez; Jimmy K Eng; Devin K Schweppe; James E Bruce
Journal:  J Proteome Res       Date:  2016-11-30       Impact factor: 4.466

Review 3.  Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology.

Authors:  Clinton Yu; Lan Huang
Journal:  Anal Chem       Date:  2017-11-21       Impact factor: 6.986

Review 4.  A molecular engineering toolbox for the structural biologist.

Authors:  Galia T Debelouchina; Tom W Muir
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

Review 5.  Covalent labeling-mass spectrometry with non-specific reagents for studying protein structure and interactions.

Authors:  Patanachai Limpikirati; Tianying Liu; Richard W Vachet
Journal:  Methods       Date:  2018-04-07       Impact factor: 3.608

6.  Mass Spectrometry-Based Proteomics to Define Intracellular Collagen Interactomes.

Authors:  Ngoc-Duc Doan; Andrew S DiChiara; Amanda M Del Rosario; Richard P Schiavoni; Matthew D Shoulders
Journal:  Methods Mol Biol       Date:  2019

7.  Loquacious-PD facilitates Drosophila Dicer-2 cleavage through interactions with the helicase domain and dsRNA.

Authors:  Kyle D Trettin; Niladri K Sinha; Debra M Eckert; Sarah E Apple; Brenda L Bass
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-05       Impact factor: 11.205

8.  Tools for 3D Interactome Visualization.

Authors:  Andrew Keller; Juan D Chavez; Jimmy K Eng; Zorian Thornton; James E Bruce
Journal:  J Proteome Res       Date:  2018-12-18       Impact factor: 4.466

Review 9.  Chemical cross-linking with mass spectrometry: a tool for systems structural biology.

Authors:  Juan D Chavez; James E Bruce
Journal:  Curr Opin Chem Biol       Date:  2018-08-30       Impact factor: 8.822

10.  Expanding the Scope of Cross-Link Identifications by Incorporating Collisional Activated Dissociation and Ultraviolet Photodissociation Methods.

Authors:  Michael B Cammarata; Luis A Macias; Jake Rosenberg; Alexander Bolufer; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2018-05-11       Impact factor: 6.986

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