| Literature DB >> 26078788 |
André Luis Giacometti Conceição1, Erica Babeto1, Natalia Maria Candido1, Fernanda Craveiro Franco1, Débora Aparecida Pires de Campos Zuccari2, Jane Lopes Bonilha3, José Antônio Cordeiro4, Marilia Freitas Calmon1, Paula Rahal1.
Abstract
Though benign, giant cell tumor of bone (GCTB) can become aggressive and can exhibit a high mitotic rate, necrosis and rarely vascular invasion and metastasis. GCTB has unique histologic characteristics, a high rate of multinucleated cells, a variable and unpredictable growth potential and uncertain biological behavior. In this study, we sought to identify genes differentially expressed in GCTB, thus building a molecular profile of this tumor. We performed quantitative real-time polymerase chain reaction (qPCR), immunohistochemistry and analyses of methylation to identify genes that are putatively associated with GCTB. The expression of the ADAM23 and CDKN2A genes was decreased in GCTB samples compared to normal bone tissue, measured by qPCR. Additionally, a high hypermethylation frequency of the promoter regions of ADAM23 and CDKN2A in GCTB was observed. The expression of the MAP2K3, MMP14, TIMP2 and VIM genes was significantly higher in GCTB than in normal bone tissue, a fact that was confirmed by qPCR and immunohistochemistry. The set of genes identified here furthers our understanding of the molecular basis of GCTB.Entities:
Keywords: Giant cell tumor of bone; gene expression; hypermethylation; immunohistochemistry
Year: 2015 PMID: 26078788 PMCID: PMC4466407 DOI: 10.7150/jca.11238
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Primer sequences used in quantitative real-time polymerase chain reaction
| Gene | Primer Sequence (5' - 3') | Size of product |
|---|---|---|
| F:CCACTCGATTCCAAGGGTAAAGT | 64bp | |
| F:ATATGGCCTTTCAAACACAGC | 82bp | |
| F:ACCAGAGGCAGTAACCATGC | 99bp | |
| F:CCCGAAGTTCTTCTGCAGTC | 119bp | |
| F:GAAATGAAGCCAAAGTACCCG | 152bp | |
| F:ACCCACTCCTCCACCTTTGA | 79bp | |
| F:GCCTATGGGGTGGTAGAGAAG | 102bp | |
| F:CACTGCCTACGAGAGGAAGG | 149bp | |
| F:CCAGCTGGCAGGTATTTGAC | 100bp | |
| F:CTCTTTCCTCGTCAGGAAGC | 95bp | |
| F:GTAGTGATCAGGGCCAAAGC | 124bp | |
| F:GGGGAAGAAGCTGGTAAAGG | 135bp | |
| F:GAAATTGCAGGAGGAGATGC | 116bp | |
| F:TGCACTGAGTGTGGAAAAGC | 107bp |
Primer sequences used in methylation-specific polymerase chain reaction
| Gene | External Primer | T°C | Primer sequence | T°C | Size of product M | |
|---|---|---|---|---|---|---|
| Methylated sequence (5'-3') | Unmethylated sequence (5'-3') | |||||
| F:ATTGTTTTTTGGTTAGAATGTCG | F:ATTGTTTTTTTGTTAGAATGTTG | 59 | 100 | |||
| R:TAAAAAAAACACAAAAAACCGAACG | R:TAAAAAAAACACAAAAAACCAAACA | |||||
| F:GGAGAGGGGGAGAGTAGGT | 60 | F:CGGGGAGTAGTATGGAGTCGGCGGC | F:TGGGGAGTAGTATGGAGTTGGTGGT | 64 | 81 | |
| R:CTACAAACCCTCTACCCACCT | R: GACCCCGAACCGCGACCGTAA | R: CAACCCCAAACCACAACCATAA | ||||
T= annealing temperature (°C), U= Unmethylated sequence, M= Methylated sequence.
Epidemiological, clinical and pathological characteristics of patients diagnosed with GCTB
| Sample | Age(y) | Sex | Anatomic location | Outcome | |
|---|---|---|---|---|---|
| Recurrence (date) | Metastasis (date) | ||||
| 1F | 37 | M | Proximal tibia L | ned | 19 months |
| 2F | 41 | F | Distal radius R | ned | ned |
| 3F | 24 | M | Proximal femur L | ned | ned |
| 4F/P | 52 | F | Distal femur L | ned | ned |
| 5F | 17 | M | Scapula L | ned | ned |
| 6F | 32 | F | Olecranon R | 11 months | ned |
| 7F/P | 52 | M | Distal femur L | 11 months | ned |
| 8F/P | 74 | F | Distal femur L | 19 months | ned |
| 9F | 35 | M | Distal femur L | ned | ned |
| 10F | 33 | M | Proximal tibia R | 20 months | ned |
| 11F | 21 | F | Proximal tibia R | ned | ned |
| 12F | 37 | F | Proximal tibia L | ned | ned |
| 13F | 13 | F | * | ned | 41 months |
| 14F/P | 28 | F | Distal femur R | 19 months | ned |
| 15F | 19 | F | Sacrum | ned | ned |
| 16F | 22 | F | Distal fibula R | ned | ned |
| 17F | 16 | F | Ischium R | ned | ned |
| 18F | 22 | M | Distal fibula L | ned | 20 months |
| 19F | 27 | M | Proximal humerus L | ned | No |
| 20F | 69 | F | Occipital | ned | ned |
| 21F | 24 | M | Proximal tibia R | 22 months | ned |
| 22F | 46 | F | Distal radius L | ned | ned |
| 23F | 58 | F | Hemipelvis R | ned | ned |
| 24P | 55 | M | Proximal tíbia L | ned | ned |
| 25P | 22 | F | Ischium R | ned | 65 months |
| 26P | 57 | M | Proximal tibia L | 42 months | ned |
| 27P | 34 | M | Proximal tibia R | ned | ned |
| 28P | 24 | M | Distal radius L | ned | ned |
| 29P | 27 | M | Distal femur L | ned | ned |
| 30P | 51 | F | Scapula L | Yes* | 07 months |
| 31P | 31 | M | Wrist R | ned | ned |
| 32P | 22 | F | Distal radius R | ned | ned |
| 33P | 41 | M | Distal femur L | ned | 01 months |
| 34P | 24 | F | Wrist L | ned | ned |
| 35P | 41 | M | Distal femur R | ned | ned |
| 36P | 55 | M | Distal radius L | ned | ned |
| 37P | 41 | F | Distal radius L | ned | ned |
| 38P | 35 | M | Thumb L | ned | ned |
| 39P | 39 | M | Proximal fibula L | ned | ned |
| 40P | 53 | M | Proximal tibia R | ned | ned |
| 41P | 38 | F | Distal femur L | ned | ned |
| 42P | 19 | F | Distal femur L | ned | ned |
Abbreviations: f: fresh tumor; p: paraffin-embedded tumor; f: female; m: male; r: right; l: left; ned: no evidence of disease, * = no information was obtained.
Figure 1mRNA expression levels media in GCTB samples. mRNA expression of the selected genes using qPCR. The results are shown as the fold change in expression relative to normal bone of femur. (*p < 0.001, Wilcoxon Signed Rank Test)
Figure 2Representative data showing the methylation status of the promoter regions of the genes Lanes U and M correspond to unmethylated and methylated reactions, respectively. In each case, 3F indicates GCTB patient sample, C- indicates DNA from lymphocyte, C+ indicates in vitro methylated DNA (IVD), H2O indicates negative PCR control. On the left: molecular weight marker; and below: size of methylated PCR product.
Methylation pattern of ADAM23 and CDKN2A (p16) in 26 GCTB samples
| Samples | ||
|---|---|---|
| 3F | ˜ | ˜ |
| 4F | ˜ | ˜ |
| 7F | ˜ | ˜ |
| 9F | ˜ | ˜ |
| 10F | ˜ | ˜ |
| 11F | ˜ | ˜ |
| 12F | ˜ | ˜ |
| 13F | ˜ | ˜ |
| 14F | ˜ | ˜ |
| 15F | ˜ | ˜ |
| 18F | ˜ | X |
| 19F | ˜ | ˜ |
| 23F | ˜ | ˜ |
| 24P | ˜ | ˜ |
| 25P | ˜ | X |
| 28P | ˜ | ˜ |
| 29P | ™ | ˜ |
| 30P | ˜ | ™ |
| 35P | ˜ | ™ |
| 37P | ˜ | ˜ |
| 38P | ˜ | ˜ |
| 39P | ˜ | ˜ |
| 40P | ˜ | ™ |
| 41P | ˜ | ˜ |
| 42P | ™ | ˜ |
legend: ˜: methylated genes; ™: unmethylated genes and x: not amplified.
Figure 3Immunohistochemistry in GCTB and control samples. Protein detection of (A) MAP2K3, (B) MMP14, (C) TIMP2 and (D) VIM in giant cell tumor of bone samples by immunohistochemistry. (E-H) Normal bone samples were used as negative controls and (I, J, L) breast carcinoma and (K) normal pancreas were used as positive controls. The presence of multinucleated giant cells is marked with asterisk. (M) Graphic of densitometry of the immunostaining of MAP2K3, MMP14, TIMP2 and VIM in the samples analyzed. Bars = 20 μm. (*p < 0.05, Mann-Whitney test).