Literature DB >> 26068748

Small-Angle Neutron Scattering for Structural Biology of Protein-RNA Complexes.

Frank Gabel1.   

Abstract

This chapter deals with the applications of small-angle neutron scattering (SANS) for the structural study of protein-RNA complexes in solution. After a brief historical introduction, the basic theory and practical requirements (e.g., sample state) for SANS experiments will be treated. Next, model-free parameters, such as the molecular mass and the radius of gyration, which can be obtained without a priori structural information, will be introduced. A more detailed section on the specific properties of SANS (with respect to its sister technique, small-angle X-ray scattering), and their implications on possibilities and limits of model building and interpretation will be discussed with a focus on protein-RNA systems. A practical illustration of the information content of SANS data will be given by applying ab initio modeling to a tRNA-synthetase system of known high-resolution structure. Finally, two present state-of-the-art examples that combine SANS data with complementary structural biology techniques (NMR and crystallography) will be presented and possible future developments and applications will be discussed.
© 2015 Elsevier Inc. All rights reserved.

Keywords:  Conformational change; Contrast variation; Deuteration; Modeling; Protein; RNA; Scattering length density; Shape; Small-angle neutron scattering

Mesh:

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Year:  2015        PMID: 26068748     DOI: 10.1016/bs.mie.2015.02.003

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  9 in total

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Journal:  Biophys J       Date:  2018-08-17       Impact factor: 4.033

Review 4.  Applications of NMR to structure determination of RNAs large and small.

Authors:  Ravi P Barnwal; Fan Yang; Gabriele Varani
Journal:  Arch Biochem Biophys       Date:  2017-06-16       Impact factor: 4.013

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Journal:  J Appl Crystallogr       Date:  2018-03-28       Impact factor: 3.304

6.  Size-exclusion chromatography small-angle X-ray scattering of water soluble proteins on a laboratory instrument.

Authors:  Saskia Bucciarelli; Søren Roi Midtgaard; Martin Nors Pedersen; Søren Skou; Lise Arleth; Bente Vestergaard
Journal:  J Appl Crystallogr       Date:  2018-11-09       Impact factor: 3.304

7.  Structural Characterization of Non-structural Protein 9 Complexed With Specific Nanobody Pinpoints Two Important Residues Involved in Porcine Reproductive and Respiratory Syndrome Virus Replication.

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Journal:  Front Microbiol       Date:  2020-11-12       Impact factor: 5.640

8.  Medical contrast agents as promising tools for biomacromolecular SAXS experiments.

Authors:  Frank Gabel; Sylvain Engilberge; Emmanuelle Schmitt; Aurélien Thureau; Yves Mechulam; Javier Pérez; Eric Girard
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-08-09       Impact factor: 5.699

Review 9.  Viewing SARS-CoV-2 Nucleocapsid Protein in Terms of Molecular Flexibility.

Authors:  Tatsuhito Matsuo
Journal:  Biology (Basel)       Date:  2021-05-21
  9 in total

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