Literature DB >> 26068112

Dimeric CRISPR RNA-Guided FokI-dCas9 Nucleases Directed by Truncated gRNAs for Highly Specific Genome Editing.

Nicolas Wyvekens1,2, Ved V Topkar1,2, Cyd Khayter1,2, J Keith Joung1,2,3, Shengdar Q Tsai1,2,3.   

Abstract

Monomeric clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR associated 9 (Cas9) nucleases have been widely adopted for simple and robust targeted genome editing but also have the potential to induce high-frequency off-target mutations. In principle, two orthogonal strategies for reducing off-target cleavage, truncated guide RNAs (tru-gRNAs) and dimerization-dependent RNA-guided FokI-dCas9 nucleases (RFNs), could be combined as tru-RFNs to further improve genome editing specificity. Here we identify a robust tru-RFN architecture that shows high activity in human cancer cell lines and embryonic stem cells. Additionally, we demonstrate that tru-gRNAs reduce the undesirable mutagenic effects of monomeric FokI-dCas9. Tru-RFNs combine the advantages of two orthogonal strategies for improving the specificity of CRISPR-Cas nucleases and therefore provide a highly specific platform for performing genome editing.

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Year:  2015        PMID: 26068112      PMCID: PMC4509490          DOI: 10.1089/hum.2015.084

Source DB:  PubMed          Journal:  Hum Gene Ther        ISSN: 1043-0342            Impact factor:   5.695


  26 in total

1.  Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells.

Authors:  Xuebing Wu; David A Scott; Andrea J Kriz; Anthony C Chiu; Patrick D Hsu; Daniel B Dadon; Albert W Cheng; Alexandro E Trevino; Silvana Konermann; Sidi Chen; Rudolf Jaenisch; Feng Zhang; Phillip A Sharp
Journal:  Nat Biotechnol       Date:  2014-04-20       Impact factor: 54.908

Review 2.  Genome editing. The new frontier of genome engineering with CRISPR-Cas9.

Authors:  Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2014-11-28       Impact factor: 47.728

3.  E-CRISP: fast CRISPR target site identification.

Authors:  Florian Heigwer; Grainne Kerr; Michael Boutros
Journal:  Nat Methods       Date:  2014-02       Impact factor: 28.547

4.  Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease.

Authors:  Cem Kuscu; Sevki Arslan; Ritambhara Singh; Jeremy Thorpe; Mazhar Adli
Journal:  Nat Biotechnol       Date:  2014-05-18       Impact factor: 54.908

5.  Genome engineering using the CRISPR-Cas9 system.

Authors:  F Ann Ran; Patrick D Hsu; Jason Wright; Vineeta Agarwala; David A Scott; Feng Zhang
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

Review 6.  CRISPR-Cas systems for editing, regulating and targeting genomes.

Authors:  Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-03-02       Impact factor: 54.908

7.  Frequent somatic mutations of the APC gene in human pancreatic cancer.

Authors:  A Horii; S Nakatsuru; Y Miyoshi; S Ichii; H Nagase; H Ando; A Yanagisawa; E Tsuchiya; Y Kato; Y Nakamura
Journal:  Cancer Res       Date:  1992-12-01       Impact factor: 12.701

8.  Engineered CRISPR-Cas9 nucleases with altered PAM specificities.

Authors:  Benjamin P Kleinstiver; Michelle S Prew; Shengdar Q Tsai; Ved V Topkar; Nhu T Nguyen; Zongli Zheng; Andrew P W Gonzales; Zhuyun Li; Randall T Peterson; Jing-Ruey Joanna Yeh; Martin J Aryee; J Keith Joung
Journal:  Nature       Date:  2015-06-22       Impact factor: 49.962

9.  Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases.

Authors:  Seung Woo Cho; Sojung Kim; Yongsub Kim; Jiyeon Kweon; Heon Seok Kim; Sangsu Bae; Jin-Soo Kim
Journal:  Genome Res       Date:  2013-11-19       Impact factor: 9.043

10.  High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity.

Authors:  Vikram Pattanayak; Steven Lin; John P Guilinger; Enbo Ma; Jennifer A Doudna; David R Liu
Journal:  Nat Biotechnol       Date:  2013-08-11       Impact factor: 54.908

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  59 in total

Review 1.  Creating and evaluating accurate CRISPR-Cas9 scalpels for genomic surgery.

Authors:  Mehmet Fatih Bolukbasi; Ankit Gupta; Scot A Wolfe
Journal:  Nat Methods       Date:  2016-01       Impact factor: 28.547

Review 2.  Genome editing: a robust technology for human stem cells.

Authors:  Arun Pandian Chandrasekaran; Minjung Song; Suresh Ramakrishna
Journal:  Cell Mol Life Sci       Date:  2017-04-12       Impact factor: 9.261

3.  Re-engineered RNA-Guided FokI-Nucleases for Improved Genome Editing in Human Cells.

Authors:  Steven Havlicek; Yang Shen; Yunus Alpagu; Michaela B Bruntraeger; Nurdiana B M Zufir; Zhi Yi Phuah; Zhiyan Fu; Norris R Dunn; Lawrence W Stanton
Journal:  Mol Ther       Date:  2017-02-01       Impact factor: 11.454

4.  Circular synthesized CRISPR/Cas gRNAs for functional interrogations in the coding and noncoding genome.

Authors:  Martin Wegner; Valentina Diehl; Verena Bittl; Rahel de Bruyn; Svenja Wiechmann; Yves Matthess; Marie Hebel; Michael Gb Hayes; Simone Schaubeck; Christopher Benner; Sven Heinz; Anja Bremm; Ivan Dikic; Andreas Ernst; Manuel Kaulich
Journal:  Elife       Date:  2019-03-06       Impact factor: 8.140

Review 5.  How specific is CRISPR/Cas9 really?

Authors:  Henriette O'Geen; Abigail S Yu; David J Segal
Journal:  Curr Opin Chem Biol       Date:  2015-10-24       Impact factor: 8.822

Review 6.  Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity.

Authors:  Josh Tycko; Vic E Myer; Patrick D Hsu
Journal:  Mol Cell       Date:  2016-08-04       Impact factor: 17.970

7.  Systemic Delivery of CRISPR/Cas9 Targeting HPV Oncogenes Is Effective at Eliminating Established Tumors.

Authors:  Luqman Jubair; Sora Fallaha; Nigel A J McMillan
Journal:  Mol Ther       Date:  2019-08-29       Impact factor: 11.454

8.  Spleen Tyrosine Kinase-Mediated Autophagy Is Required for Epithelial-Mesenchymal Plasticity and Metastasis in Breast Cancer.

Authors:  Aparna Shinde; Shana D Hardy; Dongwook Kim; Saeed Salehin Akhand; Mohit Kumar Jolly; Wen-Hung Wang; Joshua C Anderson; Ryan B Khodadadi; Wells S Brown; Jason T George; Sheng Liu; Jun Wan; Herbert Levine; Christopher D Willey; Casey J Krusemark; Robert L Geahlen; Michael K Wendt
Journal:  Cancer Res       Date:  2019-02-07       Impact factor: 12.701

Review 9.  Customizing the genome as therapy for the β-hemoglobinopathies.

Authors:  Matthew C Canver; Stuart H Orkin
Journal:  Blood       Date:  2016-04-06       Impact factor: 22.113

10.  The Amaryllidaceae alkaloids: biosynthesis and methods for enzyme discovery.

Authors:  Matthew B Kilgore; Toni M Kutchan
Journal:  Phytochem Rev       Date:  2015-12-17       Impact factor: 5.374

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