Literature DB >> 26057802

X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state at 2.0 Å resolution.

Naomine Yano1, Kazumasa Muramoto2, Masao Mochizuki2, Kyoko Shinzawa-Itoh2, Eiki Yamashita3, Shinya Yoshikawa2, Tomitake Tsukihara2.   

Abstract

The X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state was determined at 2.0 Å resolution. The structure reveals that the peroxide that bridges the two metals in the fully oxidized state is replaced by a cyanide ion bound in a nearly symmetric end-on fashion without significantly changing the protein conformation outside the two metal sites.

Entities:  

Keywords:  cytochrome c oxidase; membrane protein

Mesh：

Substances：

Year:  2015        PMID： 26057802      PMCID： PMC4461337          DOI： 10.1107/S2053230X15007025

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN： 2053-230X            Impact factor:   1.056


  15 in total

1.  Structure analysis of bovine heart cytochrome c oxidase at 2.8 A resolution.

Authors:  T Tomizaki; E Yamashita; H Yamaguchi; H Aoyama; T Tsukihara; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase.

Authors:  S Yoshikawa; K Shinzawa-Itoh; R Nakashima; R Yaono; E Yamashita; N Inoue; M Yao; M J Fei; C P Libeu; T Mizushima; H Yamaguchi; T Tomizaki; T Tsukihara
Journal:  Science       Date:  1998-06-12       Impact factor: 47.728

3.  A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase.

Authors:  Kazumasa Muramoto; Kunio Hirata; Kyoko Shinzawa-Itoh; Shinji Yoko-o; Eiki Yamashita; Hiroshi Aoyama; Tomitake Tsukihara; Shinya Yoshikawa
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

4.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

5.  The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.

Authors:  Tomitake Tsukihara; Kunitoshi Shimokata; Yukie Katayama; Hideo Shimada; Kazumasa Muramoto; Hiroshi Aoyama; Masao Mochizuki; Kyoko Shinzawa-Itoh; Eiki Yamashita; Min Yao; Yuzuru Ishimura; Shinya Yoshikawa
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

6.  Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1995-08-25       Impact factor: 47.728

7.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

8.  A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump.

Authors:  Hiroshi Aoyama; Kazumasa Muramoto; Kyoko Shinzawa-Itoh; Kunio Hirata; Eiki Yamashita; Tomitake Tsukihara; Takashi Ogura; Shinya Yoshikawa
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-21       Impact factor: 11.205

9.  How good are my data and what is the resolution?

Authors:  Philip R Evans; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

10.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  6 in total

1.  Structural basis of mammalian complex IV inhibition by steroids.

Authors:  Justin M Di Trani; Agnes Moe; Daniel Riepl; Patricia Saura; Ville R I Kaila; Peter Brzezinski; John L Rubinstein
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-19       Impact factor: 12.779

2.  Cardiolipin deficiency causes a dissociation of the b 6 c:caa 3 megacomplex in B. subtilis membranes.

Authors:  Led Yered Jafet García Montes de Oca; Tecilli Cabellos Avelar; Gerardo Ignacio Picón Garrido; Alicia Chagoya-López; Luis González de la Vara; Norma Laura Delgado Buenrostro; Yolanda Irasema Chirino-López; Carlos Gómez-Lojero; Emma Berta Gutiérrez-Cirlos
Journal:  J Bioenerg Biomembr       Date:  2016-08-09       Impact factor: 2.945

3.  Endogenous Carbon Monoxide Signaling Modulates Mitochondrial Function and Intracellular Glucose Utilization: Impact of the Heme Oxygenase Substrate Hemin.

Authors:  David Stucki; Julia Steinhausen; Philipp Westhoff; Heide Krahl; Dominik Brilhaus; Annika Massenberg; Andreas P M Weber; Andreas S Reichert; Peter Brenneisen; Wilhelm Stahl
Journal:  Antioxidants (Basel)       Date:  2020-07-23

4.  Characterisation of the Cyanate Inhibited State of Cytochrome c Oxidase.

Authors:  Fabian Kruse; Anh Duc Nguyen; Jovan Dragelj; Ramona Schlesinger; Joachim Heberle; Maria Andrea Mroginski; Inez M Weidinger
Journal:  Sci Rep       Date:  2020-03-02       Impact factor: 4.379

5.  Isolation of yeast complex IV in native lipid nanodiscs.

Authors:  Irina A Smirnova; Dan Sjöstrand; Fei Li; Markus Björck; Jacob Schäfer; Henrik Östbye; Martin Högbom; Christoph von Ballmoos; Gabriel C Lander; Pia Ädelroth; Peter Brzezinski
Journal:  Biochim Biophys Acta       Date:  2016-09-13

6.  Long-lived mitochondrial cristae proteins in mouse heart and brain.

Authors:  Ewa Bomba-Warczak; Seby L Edassery; Timothy J Hark; Jeffrey N Savas
Journal:  J Cell Biol       Date:  2021-07-14       Impact factor: 10.539
  6 in total

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