Literature DB >> 14673090

The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.

Tomitake Tsukihara1, Kunitoshi Shimokata, Yukie Katayama, Hideo Shimada, Kazumasa Muramoto, Hiroshi Aoyama, Masao Mochizuki, Kyoko Shinzawa-Itoh, Eiki Yamashita, Min Yao, Yuzuru Ishimura, Shinya Yoshikawa.   

Abstract

Mitochondrial cytochrome c oxidase plays an essential role in aerobic cellular respiration, reducing dioxygen to water in a process coupled with the pumping of protons across the mitochondrial inner membrane. An aspartate residue, Asp-51, located near the enzyme surface, undergoes a redox-coupled x-ray structural change, which is suggestive of a role for this residue in redox-driven proton pumping. However, functional or mechanistic evidence for the involvement of this residue in proton pumping has not yet been obtained. We report that the Asp-51 --> Asn mutation of the bovine enzyme abolishes its proton-pumping function without impairment of the dioxygen reduction activity. Improved x-ray structures (at 1.8/1.9-A resolution in the fully oxidized/reduced states) show that the net positive charge created upon oxidation of the low-spin heme of the enzyme drives the active proton transport from the interior of the mitochondria to Asp-51 across the enzyme via a water channel and a hydrogen-bond network, located in tandem, and that the enzyme reduction induces proton ejection from the aspartate to the mitochondrial exterior. A peptide bond in the hydrogen-bond network critically inhibits reverse proton transfer through the network. A redox-coupled change in the capacity of the water channel, induced by the hydroxyfarnesylethyl group of the low-spin heme, suggests that the channel functions as an effective proton-collecting region. Infrared results indicate that the conformation of Asp-51 is controlled only by the oxidation state of the low-spin heme. These results indicate that the low-spin heme drives the proton-pumping process.

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Year:  2003        PMID: 14673090      PMCID: PMC307562          DOI: 10.1073/pnas.2635097100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  The proton/electron coupling ratio at heme a and Cu(A) in bovine heart cytochrome c oxidase.

Authors:  N Capitanio; G Capitanio; D Boffoli; S Papa
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

Review 2.  Mitochondrial gene therapy: an arena for the biomedical use of inteins.

Authors:  A D de Grey
Journal:  Trends Biotechnol       Date:  2000-09       Impact factor: 19.536

3.  The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.

Authors:  Margareta Svensson-Ek; Jeff Abramson; Gisela Larsson; Susanna Törnroth; Peter Brzezinski; So Iwata
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

4.  Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase.

Authors:  S Yoshikawa; K Shinzawa-Itoh; R Nakashima; R Yaono; E Yamashita; N Inoue; M Yao; M J Fei; C P Libeu; T Mizushima; H Yamaguchi; T Tomizaki; T Tsukihara
Journal:  Science       Date:  1998-06-12       Impact factor: 47.728

5.  Cytochrome c oxidase: evidence for interaction of water molecules with cytochrome a.

Authors:  M Sassaroli; Y C Ching; S Dasgupta; D L Rousseau
Journal:  Biochemistry       Date:  1989-04-18       Impact factor: 3.162

6.  Limitations to in vivo import of hydrophobic proteins into yeast mitochondria. The case of a cytoplasmically synthesized apocytochrome b.

Authors:  M G Claros; J Perea; Y Shu; F A Samatey; J L Popot; C Jacq
Journal:  Eur J Biochem       Date:  1995-03-15

7.  Redox-linked hydrogen bond strength changes in cytochrome a: implications for a cytochrome oxidase proton pump.

Authors:  G T Babcock; P M Callahan
Journal:  Biochemistry       Date:  1983-05-10       Impact factor: 3.162

8.  Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. I. Spectral parameters of amino acid residue absorption bands.

Authors:  N N Kalnin
Journal:  Biopolymers       Date:  1990       Impact factor: 2.505

9.  Effects of overall oxidation state on infrared spectra of heme a3 cyanide in bovine heart cytochrome c oxidase. Evidence of novel mechanistic roles for CuB.

Authors:  S Yoshikawa; M Mochizuki; X J Zhao; W S Caughey
Journal:  J Biol Chem       Date:  1995-03-03       Impact factor: 5.157

10.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

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  132 in total

1.  Electronic continuum model for molecular dynamics simulations of biological molecules.

Authors:  I V Leontyev; A A Stuchebrukhov
Journal:  J Chem Theory Comput       Date:  2010       Impact factor: 6.006

2.  A single-amino-acid lid renders a gas-tight compartment within a membrane-bound transporter.

Authors:  Lina Salomonsson; Alex Lee; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-02       Impact factor: 11.205

Review 3.  Structures of membrane proteins.

Authors:  Kutti R Vinothkumar; Richard Henderson
Journal:  Q Rev Biophys       Date:  2010-02       Impact factor: 5.318

4.  Cell-free synthesis of cytochrome c oxidase, a multicomponent membrane protein.

Authors:  Yukie Katayama; Kunitoshi Shimokata; Makoto Suematsu; Takashi Ogura; Tomitake Tsukihara; Shinya Yoshikawa; Hideo Shimada
Journal:  J Bioenerg Biomembr       Date:  2010-04-06       Impact factor: 2.945

Review 5.  Phosphorylation of mammalian cytochrome c and cytochrome c oxidase in the regulation of cell destiny: respiration, apoptosis, and human disease.

Authors:  Maik Hüttemann; Icksoo Lee; Lawrence I Grossman; Jeffrey W Doan; Thomas H Sanderson
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

6.  Orientation and conformation of lipids in crystals of transmembrane proteins.

Authors:  Derek Marsh; Tibor Páli
Journal:  Eur Biophys J       Date:  2012-05-30       Impact factor: 1.733

7.  Cytochrome aa3 Oxygen Reductase Utilizes the Tunnel Observed in the Crystal Structures To Deliver O2 for Catalysis.

Authors:  Paween Mahinthichaichan; Robert B Gennis; Emad Tajkhorshid
Journal:  Biochemistry       Date:  2018-03-29       Impact factor: 3.162

8.  A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase.

Authors:  Kazumasa Muramoto; Kunio Hirata; Kyoko Shinzawa-Itoh; Shinji Yoko-o; Eiki Yamashita; Hiroshi Aoyama; Tomitake Tsukihara; Shinya Yoshikawa
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

9.  Phosphorylation of Cytochrome c Threonine 28 Regulates Electron Transport Chain Activity in Kidney: IMPLICATIONS FOR AMP KINASE.

Authors:  Gargi Mahapatra; Ashwathy Varughese; Qinqin Ji; Icksoo Lee; Jenney Liu; Asmita Vaishnav; Christopher Sinkler; Alexandr A Kapralov; Carlos T Moraes; Thomas H Sanderson; Timothy L Stemmler; Lawrence I Grossman; Valerian E Kagan; Joseph S Brunzelle; Arthur R Salomon; Brian F P Edwards; Maik Hüttemann
Journal:  J Biol Chem       Date:  2016-10-07       Impact factor: 5.157

10.  An arginine to lysine mutation in the vicinity of the heme propionates affects the redox potentials of the hemes and associated electron and proton transfer in cytochrome c oxidase.

Authors:  Denise A Mills; Lois Geren; Carrie Hiser; Bryan Schmidt; Bill Durham; Francis Millett; Shelagh Ferguson-Miller
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

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