Literature DB >> 26057235

AGEseq: Analysis of Genome Editing by Sequencing.

Liang-Jiao Xue1, Chung-Jui Tsai2.   

Abstract

Mesh:

Year:  2015        PMID: 26057235     DOI: 10.1016/j.molp.2015.06.001

Source DB:  PubMed          Journal:  Mol Plant        ISSN: 1674-2052            Impact factor:   13.164


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  15 in total

1.  Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments.

Authors:  Matthew C Canver; Maximilian Haeussler; Daniel E Bauer; Stuart H Orkin; Neville E Sanjana; Ophir Shalem; Guo-Cheng Yuan; Feng Zhang; Jean-Paul Concordet; Luca Pinello
Journal:  Nat Protoc       Date:  2018-04-12       Impact factor: 13.491

2.  Compensatory Guaiacyl Lignin Biosynthesis at the Expense of Syringyl Lignin in 4CL1-Knockout Poplar.

Authors:  Chung-Jui Tsai; Peng Xu; Liang-Jiao Xue; Hao Hu; Batbayar Nyamdari; Radnaa Naran; Xiaohong Zhou; Geert Goeminne; Ruili Gao; Erica Gjersing; Joseph Dahlen; Sivakumar Pattathil; Michael G Hahn; Mark F Davis; John Ralph; Wout Boerjan; Scott A Harding
Journal:  Plant Physiol       Date:  2020-03-05       Impact factor: 8.340

Review 3.  High-throughput methods for genome editing: the more the better.

Authors:  Yong Huang; Meiqi Shang; Tingting Liu; Kejian Wang
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

4.  CRISPRing into the woods.

Authors:  Chung-Jui Tsai; Liang-Jiao Xue
Journal:  GM Crops Food       Date:  2015-09-11       Impact factor: 3.074

5.  Cas-analyzer: an online tool for assessing genome editing results using NGS data.

Authors:  Jeongbin Park; Kayeong Lim; Jin-Soo Kim; Sangsu Bae
Journal:  Bioinformatics       Date:  2016-08-24       Impact factor: 6.937

Review 6.  Genome Editing in Trees: From Multiple Repair Pathways to Long-Term Stability.

Authors:  William Patrick Bewg; Dong Ci; Chung-Jui Tsai
Journal:  Front Plant Sci       Date:  2018-11-23       Impact factor: 5.753

7.  Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection.

Authors:  Costa Bachas; Jasmina Hodzic; Johannes C van der Mijn; Chantal Stoepker; Henk M W Verheul; Rob M F Wolthuis; Emanuela Felley-Bosco; Wessel N van Wieringen; Victor W van Beusechem; Ruud H Brakenhoff; Renée X de Menezes
Journal:  BMC Bioinformatics       Date:  2018-08-20       Impact factor: 3.169

8.  AlleleProfileR: A versatile tool to identify and profile sequence variants in edited genomes.

Authors:  Arne A N Bruyneel; Alexandre R Colas; Ioannis Karakikes; Mark Mercola
Journal:  PLoS One       Date:  2019-12-26       Impact factor: 3.240

9.  Efficient CRISPR/Cas9 mediated Pooled-sgRNAs assembly accelerates targeting multiple genes related to male sterility in cotton.

Authors:  Mohamed Ramadan; Muna Alariqi; Yizan Ma; Yanlong Li; Zhenping Liu; Rui Zhang; Shuangxia Jin; Ling Min; Xianlong Zhang
Journal:  Plant Methods       Date:  2021-02-08       Impact factor: 4.993

10.  Two efficient CRISPR/Cas9 systems for gene editing in soybean.

Authors:  Jéssica Carrijo; Eudald Illa-Berenguer; Peter LaFayette; Nathalia Torres; Francisco J L Aragão; Wayne Parrott; Giovanni R Vianna
Journal:  Transgenic Res       Date:  2021-04-02       Impact factor: 2.788

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