| Literature DB >> 26057129 |
Toshiki Doi1, Suguru Yamamoto2, Takatoshi Morinaga3, Ken-ei Sada4, Noriaki Kurita5, Yoshihiro Onishi6.
Abstract
BACKGROUND: Few risk scores are available for predicting mortality in chronic kidney disease (CKD) patients undergoing predialysis nephrology care. Here, we developed a risk score using predialysis nephrology practice data to predict 1-year mortality following the initiation of haemodialysis (HD) for CKD patients.Entities:
Mesh:
Year: 2015 PMID: 26057129 PMCID: PMC4461290 DOI: 10.1371/journal.pone.0129180
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Candidate predictors and outcome variables.
| Number missing | Analysis cohort (n = 688) | Survived (n = 626) | Died (n = 62) | |
|---|---|---|---|---|
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| 0 | 69 (59–77) | 69 (59–76) | 73 (65–78) |
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| 0 | 33.4 | 33.5 | 32.3 |
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| 23 | 22.7 (20.6–25.4) | 23.0 (20.7–25.5) | 21.5 (19.6–23.9) |
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| 0 | 42.6 | 43.8 | 30.7 |
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| 0 | 5.43 (4.37–6.71) | 5.38 (4.36–6.55) | 6.40 (4.89–7.89) |
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| 2 | 86.2 (69.5–106.8) | 86.1 (70.0–106.0) | 90.1 (67.7–116.1) |
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| 1 | 8.7 (7.7–9.7) | 8.7 (7.7–9.7) | 8.4 (7.4–9.5) |
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| 34 | 3.2 (2.8–3.6) | 3.3 (2.9–3.6) | 3.0 (2.6–3.4) |
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| 4 | 4.5 (4.0–5.0) | 4.5 (4.1–5.0) | 4.7 (3.7–5.4) |
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| 12 | 7.9 (7.3–8.4) | 7.9 (7.3–8.4) | 7.8 (7.5–8.6) |
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| 13 | 5.7 (4.8–6.7) | 5.7 (4.8–6.8) | 5.4 (4.8–6.4) |
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| 46 | 0.21 (0.07–0.99) | 0.20 (0.06–0.80) | 0.99 (0.18–3.07) |
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| 22 | |||
| 0, % | 45.6 | 48.9 | 11.9 | |
| 1–2, % | 42.5 | 40.7 | 61.0 | |
| ≥3, % | 11.9 | 10.4 | 27.1 | |
|
| 5 | |||
| 0, % | 14.7 | 15.8 | 3.2 | |
| 1, % | 40.1 | 41.9 | 22.6 | |
| 2, % | 21.2 | 22.0 | 12.9 | |
| 3, % | 16.0 | 13.6 | 40.3 | |
| 4, % | 7.3 | 0.6 | 19.3 | |
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| 11 | 73.0 | 72.5 | 78.0 |
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| 2 | 65.5 | 65.6 | 63.9 |
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| 5 | 23.9 | 23.6 | 26.2 |
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| 9 | 36.4 | 35.6 | 44.2 |
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| 8 | 61.9 | 61.1 | 70.5 |
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| 7 | 4.9 | 4.7 | 6.6 |
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| 14 | 4.9 | 5.1 | 3.3 |
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| 9 | 1.3 | 1.0 | 5.0 |
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| 4 | 3.1 | 2.4 | 9.8 |
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| 8 | 12.4 | 12.3 | 13.1 |
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| 19 | 10.0 | 10.5 | 4.9 |
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| 3 | 2.3 | 2.1 | 4.9 |
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| 4 | 60.7 | 62.1 | 45.9 |
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| 45 | 35.3 | 36.1 | 26.8 |
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| 6 | 85.8 | 87.5 | 67.7 |
Continuous variables represented as median with interquartile range in parentheses.
eGFR, estimated glomerular filtration rate; CNS, central nervous system; ESA, erythropoiesis-stimulating agent
aItems related to diabetes and renal disease were excluded from the original Charlson Comorbidity Index in the present study.
Fig 1Process of the multiple imputation and derivation of the prediction rule.
(1) Five multiply imputed datasets were created using original data. (2) Backward elimination was separately applied to each of the five imputed datasets, resulting in five sets of selected predictors. (3) Predictors that were selected in all of the five data sets were chosen as the final set of selected predictors, with exclusion of some predictors based on balance between number of candidate predictors with number of outcomes (deaths) and discussion according to clinical relevance. (4) The logistic regression with the selected six predictors was separately applied to each of the five imputed data sets, giving five sets of β-coefficients of the six predictors. (5) To avoid overfitting, each of five sets of β-coefficients of the six predictors were shrunken using heuristic shrinkage factor. Then, the mean for each of the five estimates for β-coefficients of the final model were taken and variances of the five estimates were pooled according to Rubin’s rules. (6) The shrunken β-coefficients of the predictors in the final model divided by two-fifths of the two small β-coefficients in the model and rounded up to the nearest integer to give a simple point score.
Retained predictors in each of 5 imputed dataset and choice of the predictors.
| Predictors | ImputedData 1 | ImputedData 2 | ImputedData 3 | ImputedData 4 | ImputedData 5 | Choice with further discussion based on clinical relevance |
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| X | X | X | X | X | Chosen |
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| X | X | X | X | ||
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| X | X | X | X | X | Chosen |
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| X | X | X | X | X | Chosen |
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| X | X | X | X | X | Chosen |
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| X | X | X | X | X | Chosen |
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| X | X | X | X | X | Chosen |
Predictors listed in this table were entered to logistic regression model with backward elimination procedure. X indicates predictors retained after backward elimination procedure in each of the five imputed dataset. Predictors which retained all of the five imputed dataset were considered as candidate predictors of final prediction model. After further discussion based on clinical relevance, six predictors were chosen as the final prediction model.
eGFR, estimated glomerular filtration rate; CNS, central nervous system; ESA, erythropoiesis-stimulating agent
aItems related to diabetes and renal disease were excluded from the original Charlson Comorbidity Index in the present study.
Multivariable predictors of 1-year mortality and associated risk scoring system.
| Variables | Adjusted odds ratio | 95% confidence interval | β-coefficient | Risk score |
|---|---|---|---|---|
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| 2.05 | 1.13–3.74 | 0.66 |
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| 2.33 | 0.96–5.63 | 0.77 |
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| 2.80 | 1.41–5.59 | 0.94 |
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| 1–2 | 3.59 | 1.57–8.20 | 1.17 |
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| ≥3 | 6.74 | 2.57–17.6 | 1.74 |
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| 1–2 | 2.03 | 0.45–9.13 | 0.65 |
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| 3–4 | 6.75 | 1.51–30.1 | 1.74 |
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| 3.29 | 1.67–6.45 | 1.09 |
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eGFR, estimated glomerular filtration rate; ESA, erythropoiesis-stimulating agent
aOriginal β-coefficients multiplied by heuristic shrinkage factor to improve predictions for future patients.
bScores assigned by dividing the shrunken β-coefficients by 0.568 and rounding to nearest integer.
cItems related to diabetes and renal disease were excluded from the original Charlson Comorbidity Index in the present study.
Fig 2Agreement between the predicted mortality risks and the observed proportions.
The short-dashed line (“Apparent”) indicates the agreement between predicted mortality risks and observed proportions of the original model. The sold line (“Bias-corrected”) indicates the agreement between predicted mortality risks and observed proportions of the bootstrap model.
Score chart to predict 1-year mortality risk.
| Points | 0 | 1 | 2 | 3 |
|---|---|---|---|---|
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| No | Yes | ||
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| No | Yes | ||
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| No | Yes | ||
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| 0 | 1–2 | ≥3 | |
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| 0 | 1–2 | 3–4 | |
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| No | Yes |
Points correspond to each predictor value and are added to give a score.
eGFR, estimated glomerular filtration rate; ESA, erythropoiesis-stimulating agent
aItems related to diabetes and renal disease were excluded from the original Charlson Comorbidity Index in the present study.
Fig 3Predicted mortality risks and observed proportions for ranges of total scores.
Prognostic score calculated form the following six items well predicts 1-year mortality for patients initiating haemodialysis: high eGFR level (>7 mL/min per 1.73 m2), low serum albumin levels, high calcium levels, high modified Charlson Comorbidity Index, low performance status, and no use of ESA. The modified Charlson Comorbidity Index was excluded items related to diabetes and renal disease from the original Charlson Comorbidity Index in the present study.
Predicted mortality risks and observed proportions for ranges of total scores.
| Total Score | Predicted mortality risk | Observed proportion | |
|---|---|---|---|
| % | (n/N) | ||
| 0–4 | 2.5% | 1.7% | (4/235) |
| 5–6 | 5.5% | 6.6% | (15/228) |
| 7–8 | 15.2% | 16.6% | (26/157) |
| 9–12 | 28.9% | 25.0% | (17/68) |
aNumber of patients experiencing 1-year mortality/total number of patients in each risk category.