Literature DB >> 26056741

Dark dyes-bright complexes: fluorogenic protein labeling.

Marcel P Bruchez1.   

Abstract

Complexes formed between organic dyes and genetically encoded proteins combine the advantages of stable and tunable fluorescent molecules and targetable, biologically integrated labels. To overcome the challenges imposed by labeling with bright fluorescent dyes, a number of approaches now exploit chemical or environmental changes to control the properties of a bound dye, converting dyes from a weakly fluorescent state to a bright, easily detectable complex. Optimized, such approaches avoid the need for removal of unbound dyes, facilitate rapid and simple assays in cultured cells and enable hybrid labeling to function more robustly in living model organisms.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26056741      PMCID: PMC4553107          DOI: 10.1016/j.cbpa.2015.05.014

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  41 in total

1.  Development of fluorogenic probes for quick no-wash live-cell imaging of intracellular proteins.

Authors:  Yuichiro Hori; Tomoya Norinobu; Motoki Sato; Kyohei Arita; Masahiro Shirakawa; Kazuya Kikuchi
Journal:  J Am Chem Soc       Date:  2013-08-08       Impact factor: 15.419

2.  Direct pH measurements by using subcellular targeting of 5(and 6-) carboxyseminaphthorhodafluor in mammalian cells.

Authors:  Hélène Benink; Mark McDougall; Dieter Klaubert; Georgyi Los
Journal:  Biotechniques       Date:  2009-09       Impact factor: 1.993

3.  Detection and quantification of beta2AR internalization in living cells using FAP-based biosensor technology.

Authors:  Gregory W Fisher; Sally A Adler; Margaret H Fuhrman; Alan S Waggoner; Marcel P Bruchez; Jonathan W Jarvik
Journal:  J Biomol Screen       Date:  2010-05-20

4.  A fluorogenic probe for SNAP-tagged plasma membrane proteins based on the solvatochromic molecule Nile Red.

Authors:  Efthymia Prifti; Luc Reymond; Miwa Umebayashi; Ruud Hovius; Howard Riezman; Kai Johnsson
Journal:  ACS Chem Biol       Date:  2014-01-29       Impact factor: 5.100

5.  Discovery of regulators of receptor internalization with high-throughput flow cytometry.

Authors:  Yang Wu; Phillip H Tapia; Gregory W Fisher; Peter C Simons; J Jacob Strouse; Terry Foutz; Alan S Waggoner; Jonathan Jarvik; Larry A Sklar
Journal:  Mol Pharmacol       Date:  2012-07-05       Impact factor: 4.436

6.  Localization microscopy using noncovalent fluorogen activation by genetically encoded fluorogen-activating proteins.

Authors:  Qi Yan; Samantha L Schwartz; Suvrajit Maji; Fang Huang; Chris Szent-Gyorgyi; Diane S Lidke; Keith A Lidke; Marcel P Bruchez
Journal:  Chemphyschem       Date:  2013-11-05       Impact factor: 3.102

7.  Enhanced photostability of genetically encodable fluoromodules based on fluorogenic cyanine dyes and a promiscuous protein partner.

Authors:  Nathaniel I Shank; Kimberly J Zanotti; Frederick Lanni; Peter B Berget; Bruce A Armitage
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

8.  High-throughput flow cytometry compatible biosensor based on fluorogen activating protein technology.

Authors:  Yang Wu; Phillip H Tapia; Gregory W Fisher; Alan S Waggoner; Jonathan Jarvik; Larry A Sklar
Journal:  Cytometry A       Date:  2013-01-09       Impact factor: 4.355

9.  Malachite green mediates homodimerization of antibody VL domains to form a fluorescent ternary complex with singular symmetric interfaces.

Authors:  Chris Szent-Gyorgyi; Robyn L Stanfield; Susan Andreko; Alison Dempsey; Mushtaq Ahmed; Sarah Capek; Alan S Waggoner; Ian A Wilson; Marcel P Bruchez
Journal:  J Mol Biol       Date:  2013-08-23       Impact factor: 5.469

10.  A fluorogenic TMP-tag for high signal-to-background intracellular live cell imaging.

Authors:  Chaoran Jing; Virginia W Cornish
Journal:  ACS Chem Biol       Date:  2013-06-19       Impact factor: 5.100

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  19 in total

1.  Fluorogenic Photoaffinity Labeling of Proteins in Living Cells.

Authors:  Tewoderos M Ayele; Steve D Knutson; Satheesh Ellipilli; Hyun Hwang; Jennifer M Heemstra
Journal:  Bioconjug Chem       Date:  2019-04-17       Impact factor: 4.774

Review 2.  Bacterial Vivisection: How Fluorescence-Based Imaging Techniques Shed a Light on the Inner Workings of Bacteria.

Authors:  Alexander Cambré; Abram Aertsen
Journal:  Microbiol Mol Biol Rev       Date:  2020-10-28       Impact factor: 11.056

3.  Engineering of a Red Fluorogenic Protein/Merocyanine Complex for Live-Cell Imaging.

Authors:  Elizabeth M Santos; Tetyana Berbasova; Wenjing Wang; Rahele Esmatpour Salmani; Wei Sheng; Chrysoula Vasileiou; James H Geiger; Babak Borhan
Journal:  Chembiochem       Date:  2019-11-13       Impact factor: 3.164

4.  Covalent live-cell labeling of proteins using a photoreactive fluorogen.

Authors:  Tewoderos M Ayele; Steve D Knutson; Jennifer M Heemstra
Journal:  Methods Enzymol       Date:  2020-04-28       Impact factor: 1.600

5.  Antibody-Linked Fluorogen-Activating Proteins for Antigen Detection and Cell Ablation.

Authors:  Daniel S Ackerman; Burcin Altun; Dmytro Kolodieznyi; Marcel P Bruchez; Andrew Tsourkas; Jonathan W Jarvik
Journal:  Bioconjug Chem       Date:  2018-12-26       Impact factor: 4.774

6.  2,7-Diaminobenzopyrylium Dyes Are Live-Cell Mitochondrial Stains.

Authors:  Sambashiva Banala; Ariana N Tkachuk; Ronak Patel; Pratik Kumar; Timothy A Brown; Luke D Lavis
Journal:  ACS Bio Med Chem Au       Date:  2022-02-28

7.  A genetically encoded cyclobutene probe for labelling of live cells.

Authors:  K Liu; B Enns; B Evans; N Wang; X Shang; W Sittiwong; P H Dussault; J Guo
Journal:  Chem Commun (Camb)       Date:  2017-09-21       Impact factor: 6.222

Review 8.  Beyond the Green Fluorescent Protein: Biomolecular Reporters for Anaerobic and Deep-Tissue Imaging.

Authors:  Harun F Ozbakir; Nolan T Anderson; Kang-Ching Fan; Arnab Mukherjee
Journal:  Bioconjug Chem       Date:  2019-12-23       Impact factor: 4.774

Review 9.  Broad Applications of Thiazole Orange in Fluorescent Sensing of Biomolecules and Ions.

Authors:  Ohad Suss; Leila Motiei; David Margulies
Journal:  Molecules       Date:  2021-05-10       Impact factor: 4.411

10.  NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids.

Authors:  Konstantin S Mineev; Sergey A Goncharuk; Marina V Goncharuk; Natalia V Povarova; Anatolii I Sokolov; Nadezhda S Baleeva; Alexander Yu Smirnov; Ivan N Myasnyanko; Dmitry A Ruchkin; Sergey Bukhdruker; Alina Remeeva; Alexey Mishin; Valentin Borshchevskiy; Valentin Gordeliy; Alexander S Arseniev; Dmitriy A Gorbachev; Alexey S Gavrikov; Alexander S Mishin; Mikhail S Baranov
Journal:  Chem Sci       Date:  2021-04-08       Impact factor: 9.825

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