Literature DB >> 26052560

Deformation-Invariant Sparse Coding for Modeling Spatial Variability of Functional Patterns in the Brain.

George H Chen, Evelina G Fedorenko, Nancy G Kanwisher, Polina Golland.   

Abstract

For a given cognitive task such as language processing, the location of corresponding functional regions in the brain may vary across subjects relative to anatomy. We present a probabilistic generative model that accounts for such variability as observed in fMRI data. We relate our approach to sparse coding that estimates a basis consisting of functional regions in the brain. Individual fMRI data is represented as a weighted sum of these functional regions that undergo deformations. We demonstrate the proposed method on a language fMRI study. Our method identified activation regions that agree with known literature on language processing and established correspondences among activation regions across subjects, producing more robust group-level effects than anatomical alignment alone.

Entities:  

Year:  2012        PMID: 26052560      PMCID: PMC4457394          DOI: 10.1007/978-3-642-34713-9_9

Source DB:  PubMed          Journal:  Mach Learn Interpret Neuroimaging (2011)


  8 in total

1.  New method for fMRI investigations of language: defining ROIs functionally in individual subjects.

Authors:  Evelina Fedorenko; Po-Jang Hsieh; Alfonso Nieto-Castañón; Susan Whitfield-Gabrieli; Nancy Kanwisher
Journal:  J Neurophysiol       Date:  2010-04-21       Impact factor: 2.714

2.  Structural analysis of fMRI data revisited: improving the sensitivity and reliability of fMRI group studies.

Authors:  Bertrand Thirion; Philippe Pinel; Alan Tucholka; Alexis Roche; Philippe Ciuciu; Jean-François Mangin; Jean-Baptiste Poline
Journal:  IEEE Trans Med Imaging       Date:  2007-09       Impact factor: 10.048

3.  Symmetric log-domain diffeomorphic Registration: a demons-based approach.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

4.  Emergence of simple-cell receptive field properties by learning a sparse code for natural images.

Authors:  B A Olshausen; D J Field
Journal:  Nature       Date:  1996-06-13       Impact factor: 49.962

5.  Multi-subject dictionary learning to segment an atlas of brain spontaneous activity.

Authors:  Gael Varoquaux; Alexandre Gramfort; Fabian Pedregosa; Vincent Michel; Bertrand Thirion
Journal:  Inf Process Med Imaging       Date:  2011

6.  Robust Atlas-Based Segmentation of Highly Variable Anatomy: Left Atrium Segmentation.

Authors:  Michal Depa; Mert R Sabuncu; Godtfred Holmvang; Reza Nezafat; Ehud J Schmidt; Polina Golland
Journal:  Stat Atlases Comput Models Heart       Date:  2010

7.  Modeling inter-subject variability in FMRI activation location: a Bayesian hierarchical spatial model.

Authors:  Lei Xu; Timothy D Johnson; Thomas E Nichols; Derek E Nee
Journal:  Biometrics       Date:  2009-12       Impact factor: 2.571

8.  Function-based intersubject alignment of human cortical anatomy.

Authors:  Mert R Sabuncu; Benjamin D Singer; Bryan Conroy; Ronald E Bryan; Peter J Ramadge; James V Haxby
Journal:  Cereb Cortex       Date:  2010-01       Impact factor: 5.357

  8 in total
  1 in total

1.  Subject-specific functional localizers increase sensitivity and functional resolution of multi-subject analyses.

Authors:  Alfonso Nieto-Castañón; Evelina Fedorenko
Journal:  Neuroimage       Date:  2012-07-08       Impact factor: 6.556

  1 in total

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