Adrian Friebel1, Johannes Neitsch1, Tim Johann1, Seddik Hammad2, Jan G Hengstler3, Dirk Drasdo4, Stefan Hoehme4. 1. Interdisciplinary Centre for Bioinformatics (IZBI), University of Leipzig, Germany. 2. Leibniz Research Centre for Working Environment and Human Factors (IfADo), Dortmund, Germany, Department of Forensic Medicine and Veterinary Toxicology, Faculty of Veterinary Medicine, South Valley University, Qena, Egypt and. 3. Leibniz Research Centre for Working Environment and Human Factors (IfADo), Dortmund, Germany. 4. Interdisciplinary Centre for Bioinformatics (IZBI), University of Leipzig, Germany, Institut National de Recherche en Informatique et en Automatique (INRIA) Unit Rocquencourt, Le Chesnay Cedex, France.
Abstract
MOTIVATION: TiQuant is a modular software tool for efficient quantification of biological tissues based on volume data obtained by biomedical image modalities. It includes a number of versatile image and volume processing chains tailored to the analysis of different tissue types which have been experimentally verified. TiQuant implements a novel method for the reconstruction of three-dimensional surfaces of biological systems, data that often cannot be obtained experimentally but which is of utmost importance for tissue modelling in systems biology. AVAILABILITY AND IMPLEMENTATION: TiQuant is freely available for non-commercial use at msysbio.com/tiquant. Windows, OSX and Linux are supported. CONTACT: hoehme@uni-leipzig.de SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
MOTIVATION: TiQuant is a modular software tool for efficient quantification of biological tissues based on volume data obtained by biomedical image modalities. It includes a number of versatile image and volume processing chains tailored to the analysis of different tissue types which have been experimentally verified. TiQuant implements a novel method for the reconstruction of three-dimensional surfaces of biological systems, data that often cannot be obtained experimentally but which is of utmost importance for tissue modelling in systems biology. AVAILABILITY AND IMPLEMENTATION: TiQuant is freely available for non-commercial use at msysbio.com/tiquant. Windows, OSX and Linux are supported. CONTACT: hoehme@uni-leipzig.de SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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