Literature DB >> 26039159

Amyloids or prions? That is the question.

Raimon Sabate1, Frederic Rousseau, Joost Schymkowitz, Cristina Batlle, Salvador Ventura.   

Abstract

Despite major efforts devoted to understanding the phenomenon of prion transmissibility, it is still poorly understood how this property is encoded in the amino acid sequence. In recent years, experimental data on yeast prion domains allow to start at least partially decrypting the sequence requirements of prion formation. These experiments illustrate the need for intrinsically disordered sequence regions enriched with a particularly high proportion of glutamine and asparagine. Bioinformatic analysis suggests that these regions strike a balance between sufficient amyloid nucleation propensity on the one hand and disorder on the other, which ensures availability of the amyloid prone regions but entropically prevents unwanted nucleation and facilitates brittleness required for propagation.

Entities:  

Keywords:  AD, Alzheimer's disease; CJD, Creutzfeldt-Jakob disease; PD, Parkinson's disease; PFD, prion forming domain; Q/N-rich domains; TSE, transmissible spongiform encephalopathy; amyloids; fALS, familial amyotrophic lateral sclerosis; neurodegenerative diseases; prions; protein intrinsic disorder; yeast

Mesh:

Substances:

Year:  2015        PMID: 26039159      PMCID: PMC4601216          DOI: 10.1080/19336896.2015.1053685

Source DB:  PubMed          Journal:  Prion        ISSN: 1933-6896            Impact factor:   3.931


  35 in total

1.  Sequence determinants of amyloid fibril formation.

Authors:  Manuela López de la Paz; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

Review 2.  Prions as protein-based genetic elements.

Authors:  Susan M Uptain; Susan Lindquist
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

3.  A size threshold limits prion transmission and establishes phenotypic diversity.

Authors:  Aaron Derdowski; Suzanne S Sindi; Courtney L Klaips; Susanne DiSalvo; Tricia R Serio
Journal:  Science       Date:  2010-10-29       Impact factor: 47.728

Review 4.  Prediction of the aggregation propensity of proteins from the primary sequence: aggregation properties of proteomes.

Authors:  Virginia Castillo; Ricardo Graña-Montes; Raimon Sabate; Salvador Ventura
Journal:  Biotechnol J       Date:  2011-04-29       Impact factor: 4.677

5.  When amyloids become prions.

Authors:  Raimon Sabate
Journal:  Prion       Date:  2014-05-15       Impact factor: 3.931

Review 6.  Legal but lethal: functional protein aggregation at the verge of toxicity.

Authors:  Angelika Falsone; S Fabio Falsone
Journal:  Front Cell Neurosci       Date:  2015-02-18       Impact factor: 5.505

7.  What makes a protein sequence a prion?

Authors:  Raimon Sabate; Frederic Rousseau; Joost Schymkowitz; Salvador Ventura
Journal:  PLoS Comput Biol       Date:  2015-01-08       Impact factor: 4.475

8.  A systematic survey identifies prions and illuminates sequence features of prionogenic proteins.

Authors:  Simon Alberti; Randal Halfmann; Oliver King; Atul Kapila; Susan Lindquist
Journal:  Cell       Date:  2009-04-03       Impact factor: 41.582

9.  Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains.

Authors:  Vladimir Espinosa Angarica; Salvador Ventura; Javier Sancho
Journal:  BMC Genomics       Date:  2013-05-10       Impact factor: 3.969

10.  PrionScan: an online database of predicted prion domains in complete proteomes.

Authors:  Vladimir Espinosa Angarica; Alfonso Angulo; Arturo Giner; Guillermo Losilla; Salvador Ventura; Javier Sancho
Journal:  BMC Genomics       Date:  2014-02-05       Impact factor: 3.969

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  19 in total

1.  Amyloid cores in prion domains: Key regulators for prion conformational conversion.

Authors:  María Rosario Fernández; Cristina Batlle; Marcos Gil-García; Salvador Ventura
Journal:  Prion       Date:  2017-01-02       Impact factor: 3.931

Review 2.  Prion-based nanomaterials and their emerging applications.

Authors:  Marta Díaz-Caballero; Maria Rosario Fernández; Susanna Navarro; Salvador Ventura
Journal:  Prion       Date:  2018-10-02       Impact factor: 3.931

3.  Self-aggregation and coaggregation of the p53 core fragment with its aggregation gatekeeper variant.

Authors:  Jiangtao Lei; Ruxi Qi; Guanghong Wei; Ruth Nussinov; Buyong Ma
Journal:  Phys Chem Chem Phys       Date:  2016-03-21       Impact factor: 3.676

4.  The Hunt for Ancient Prions: Archaeal Prion-Like Domains Form Amyloid-Based Epigenetic Elements.

Authors:  Tomasz Zajkowski; Michael D Lee; Shamba S Mondal; Amanda Carbajal; Robert Dec; Patrick D Brennock; Radoslaw W Piast; Jessica E Snyder; Nicholas B Bense; Wojciech Dzwolak; Daniel F Jarosz; Lynn J Rothschild
Journal:  Mol Biol Evol       Date:  2021-05-04       Impact factor: 16.240

5.  Excessive replacement changes drive evolution of global sheep prion protein (PRNP) sequences.

Authors:  Efe Sezgin; Eden Yitna Teferedegn; Cemal Ün; Yalçın Yaman
Journal:  Heredity (Edinb)       Date:  2022-03-10       Impact factor: 3.832

6.  The prion-like RNA-processing protein HNRPDL forms inherently toxic amyloid-like inclusion bodies in bacteria.

Authors:  Susanna Navarro; Patrizia Marinelli; Marta Diaz-Caballero; Salvador Ventura
Journal:  Microb Cell Fact       Date:  2015-07-11       Impact factor: 5.328

7.  Characterization of Soft Amyloid Cores in Human Prion-Like Proteins.

Authors:  Cristina Batlle; Natalia Sanchez de Groot; Valentin Iglesias; Susanna Navarro; Salvador Ventura
Journal:  Sci Rep       Date:  2017-09-21       Impact factor: 4.379

8.  Amino acid composition predicts prion activity.

Authors:  Fayyaz Ul Amir Afsar Minhas; Eric D Ross; Asa Ben-Hur
Journal:  PLoS Comput Biol       Date:  2017-04-10       Impact factor: 4.475

9.  The Rho Termination Factor of Clostridium botulinum Contains a Prion-Like Domain with a Highly Amyloidogenic Core.

Authors:  Irantzu Pallarès; Valentin Iglesias; Salvador Ventura
Journal:  Front Microbiol       Date:  2016-01-07       Impact factor: 5.640

10.  Characterization of Amyloid Cores in Prion Domains.

Authors:  Ricardo Sant'Anna; Maria Rosario Fernández; Cristina Batlle; Susanna Navarro; Natalia S de Groot; Louise Serpell; Salvador Ventura
Journal:  Sci Rep       Date:  2016-09-30       Impact factor: 4.379

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