Literature DB >> 19345193

A systematic survey identifies prions and illuminates sequence features of prionogenic proteins.

Simon Alberti1, Randal Halfmann, Oliver King, Atul Kapila, Susan Lindquist.   

Abstract

Prions are proteins that convert between structurally and functionally distinct states, one or more of which is transmissible. In yeast, this ability allows them to act as non-Mendelian elements of phenotypic inheritance. To further our understanding of prion biology, we conducted a bioinformatic proteome-wide survey for prionogenic proteins in S. cerevisiae, followed by experimental investigations of 100 prion candidates. We found an unexpected amino acid bias in aggregation-prone candidates and discovered that 19 of these could also form prions. At least one of these prion proteins, Mot3, produces a bona fide prion in its natural context that increases population-level phenotypic heterogeneity. The self-perpetuating states of these proteins present a vast source of heritable phenotypic variation that increases the adaptability of yeast populations to diverse environments.

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Year:  2009        PMID: 19345193      PMCID: PMC2683788          DOI: 10.1016/j.cell.2009.02.044

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  77 in total

1.  Sequence determinants of amyloid fibril formation.

Authors:  Manuela López de la Paz; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

2.  Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits.

Authors:  Heather L True; Ilana Berlin; Susan L Lindquist
Journal:  Nature       Date:  2004-08-15       Impact factor: 49.962

Review 3.  Prions as adaptive conduits of memory and inheritance.

Authors:  James Shorter; Susan Lindquist
Journal:  Nat Rev Genet       Date:  2005-06       Impact factor: 53.242

4.  Chaperone-dependent amyloid assembly protects cells from prion toxicity.

Authors:  Peter M Douglas; Sebastian Treusch; Hong-Yu Ren; Randal Halfmann; Martin L Duennwald; Susan Lindquist; Douglas M Cyr
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-14       Impact factor: 11.205

5.  Self-assembly of polyglutamine-containing huntingtin fragments into amyloid-like fibrils: implications for Huntington's disease pathology.

Authors:  E Scherzinger; A Sittler; K Schweiger; V Heiser; R Lurz; R Hasenbank; G P Bates; H Lehrach; E E Wanker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

6.  Mot3 is a transcriptional repressor of ergosterol biosynthetic genes and is required for normal vacuolar function in Saccharomyces cerevisiae.

Authors:  Cintia Hongay; Nan Jia; Martin Bard; Fred Winston
Journal:  EMBO J       Date:  2002-08-01       Impact factor: 11.598

7.  Protein-only transmission of three yeast prion strains.

Authors:  Chih-Yen King; Ruben Diaz-Avalos
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

8.  Epigenetic control of polyamines by the prion [PSI+].

Authors:  Olivier Namy; Aurélie Galopier; Cyrielle Martini; Senya Matsufuji; Céline Fabret; Jean-Pierre Rousset
Journal:  Nat Cell Biol       Date:  2008-09       Impact factor: 28.824

9.  Dissection and design of yeast prions.

Authors:  Lev Z Osherovich; Brian S Cox; Mick F Tuite; Jonathan S Weissman
Journal:  PLoS Biol       Date:  2004-03-23       Impact factor: 8.029

10.  Appearance and propagation of polyglutamine-based amyloids in yeast: tyrosine residues enable polymer fragmentation.

Authors:  Ilya M Alexandrov; Aleksandra B Vishnevskaya; Michael D Ter-Avanesyan; Vitaly V Kushnirov
Journal:  J Biol Chem       Date:  2008-04-01       Impact factor: 5.157

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  470 in total

1.  Amyloid of the Candida albicans Ure2p prion domain is infectious and has an in-register parallel β-sheet structure.

Authors:  Abbi Engel; Frank Shewmaker; Herman K Edskes; Fred Dyda; Reed B Wickner
Journal:  Biochemistry       Date:  2011-06-15       Impact factor: 3.162

2.  The self-interaction of native TDP-43 C terminus inhibits its degradation and contributes to early proteinopathies.

Authors:  I-Fan Wang; Hsiang-Yu Chang; Shin-Chen Hou; Gunn-Guang Liou; Tzong-Der Way; C-K James Shen
Journal:  Nat Commun       Date:  2012-04-03       Impact factor: 14.919

3.  Prions and chaperones: Outside the fold.

Authors:  Bijal P Trivedi
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

Review 4.  Patterns of [PSI (+) ] aggregation allow insights into cellular organization of yeast prion aggregates.

Authors:  Jens Tyedmers
Journal:  Prion       Date:  2012-07-01       Impact factor: 3.931

5.  Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

Authors:  Edgar M Medina; Gary W Jones; David A Fitzpatrick
Journal:  J Mol Evol       Date:  2011-09-22       Impact factor: 2.395

6.  High natural prevalence of a fungal prion.

Authors:  Alfons J M Debets; Henk J P Dalstra; Marijke Slakhorst; Bertha Koopmanschap; Rolf F Hoekstra; Sven J Saupe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-12       Impact factor: 11.205

7.  Distinct subregions of Swi1 manifest striking differences in prion transmission and SWI/SNF function.

Authors:  Zhiqiang Du; Emily T Crow; Hyun Seok Kang; Liming Li
Journal:  Mol Cell Biol       Date:  2010-08-02       Impact factor: 4.272

Review 8.  Emergence and natural selection of drug-resistant prions.

Authors:  James Shorter
Journal:  Mol Biosyst       Date:  2010-04-27

Review 9.  More than Just a Phase: Prions at the Crossroads of Epigenetic Inheritance and Evolutionary Change.

Authors:  Anupam K Chakravarty; Daniel F Jarosz
Journal:  J Mol Biol       Date:  2018-07-19       Impact factor: 5.469

10.  Organizing biochemistry in space and time using prion-like self-assembly.

Authors:  Christopher M Jakobson; Daniel F Jarosz
Journal:  Curr Opin Syst Biol       Date:  2017-12-06
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