| Literature DB >> 26038959 |
Cristina Padre Cardoso1, Argenil José de Assis de Oliveira2, Fernando Antônio Botoni2, Isabela Cristina Porto Rezende3, Jose Carlos Alves-Filho4, Fernando de Queiroz Cunha4, Juliana de Assis Silva Gomes Estanislau3, Luiz Alexandre Viana Magno5, Fabricio Rios-Santos6.
Abstract
Despite major improvements in its treatment and diagnosis, sepsis is still a leading cause of death and admittance to the intensive care unit (ICU). Failure to identify patients at high risk of developing septic shock contributes to an increase in the sepsis burden and rapid molecular tests are currently the most promising avenue to aid in patient risk determination and therapeutic anticipation. The primary goal of this study was to evaluate the genetic susceptibility that affects sepsis outcome in 72 sepsis patients admitted to the ICU. Seven polymorphisms were genotyped in key inflammatory response genes in sepsis, including tumour necrosis factor-α, interlelukin (IL)-1β, IL-10, IL-8, Toll-like receptor 4, CXCR1 and CXCR2. The primary finding showed that patients who were homozygous for the major A allele in IL-10 rs1800896 had almost five times higher chance to develop septic shock compared to heterozygotes. Similarly, selected clinical features and CXCR2 rs1126579 single nucleotide polymorphisms modulated septic shock susceptibility without affecting survival. These data support the hypothesis that molecular testing has clinical usefulness to improve sepsis prognostic models. Therefore, enrichment of the ICU portfolio by including these biomarkers will aid in the early identification of sepsis patients who may develop septic shock.Entities:
Mesh:
Substances:
Year: 2015 PMID: 26038959 PMCID: PMC4501407 DOI: 10.1590/0074-02760150003
Source DB: PubMed Journal: Mem Inst Oswaldo Cruz ISSN: 0074-0276 Impact factor: 2.743
Characteristics of the genes and polymorphisms evaluated by this study
| Gene | Function | SNP | Gene location | Major/minor allele | HWE p |
|---|---|---|---|---|---|
|
| Receptor α for the chemokine IL-8 | rs16858811 | Exon | C/T |
|
|
| Receptor β for the chemokine IL-8 | rs1126579 | Utr 3’ | G/T | 0.1113 |
|
| TLR associated with pathogen recognition and activation of innate immunity | rs1927911 | Intron | A/G | 0.5242 |
|
| Proinflammatory cytokine produced by activated macrophages | rs1143634 | Intragenic | C/T | 0.3461 |
|
| Chemotactic factor for neutrophils and other granulocytes | rs2227307 | Intron | T/G | 0.5242 |
|
| Antiinflammatory cytokine produced by monocytes and lymphocytes | rs1800896 | Promoter | A/G | 0.9025 |
|
| Proinflammatory cytokine that attracts neutrophils | rs1800629 | Intron | G/A | 0.4092 |
Hardy-Weinberg equilibrium (HWE) p-value in bold was considered deviated from Hardy-Weinberg principle; IL: interleukin; SNP: single nucleotide polymorphisms; TLR: Toll-like receptor; TNF: tumour necrosis factor.
Demographic and clinical characteristics of the study
| Sepsis | Severe sepsis | Septic shock | p | Survivor | Nonsurvivor | p | APACHE > 25 | APACHE < 25 | p | |
|---|---|---|---|---|---|---|---|---|---|---|
| Subjects [n (%)] | 72 | 15 (20.8) | 57 (79.2) | NA | 59 (81.9) | 13 (18.1) | NA | 36 (50) | 36 (50) | NA |
| Age | 52.74 ± 19.05 | 51.06 ± 20.10 | 54.15 ± 18.25 | 0.496 | 49.81 ± 17.95 | 66 ± 18.91 |
| 60.3 ± 17.05 | 45.1 ± 18.0 |
|
| Male [n (%)] Female [n (%)] | 46 (63.9) 26 (36.1) | 22 (66.7) 11 (33.3) | 24 (61.5) 15 (38.5) | -0.652 | 41 (89.1) 18 (69.2) | 5 (10.9) 8 (30.8) |
| 20 (43.5) 16 (61.5) | 26 (56.5) 10 (38.5) | 0.141 |
| Days at ICU | 10.63 ± 8.44 | 11.88 ± 8.48 | 9.56 ± 8.35 | 0.249 | 12.02 ± 8.6 | 4.31 ± 3.22 |
| 11.69 ± 9.75 | 9.56 ± 6.85 | 0.285 |
| APACHE II | 26.65 ± 9.93 | 26.85 ± 9.81 | 26.49 ± 10.16 | 0.879 | 24.44 ± 9.3 | 36.69 ± 5.72 |
| 34.56 ± 5.71 | 18.75 ± 6.26 |
|
| n | 7.43 ± 4.13 | 7.58 ± 4.25 | 7.31 ± 4.08 | 0.786 | 6.15 ± 3.12 | 13.23 ± 3.08 |
| 9.58 ± 4.23 | 5.28 ± 2.7 |
|
| Platelet (mm3) | 214,027 ± 122,030 | 190,818 ± 10,497 | 233,666 ± 132,965 | 0.139 | 222,440 ± 119,113 | 175,846 ± 132,681 | 0.215 | 183,666 ± 130,551 | 244,388 ± 106,151 | 0.034 |
| Neutrophils (mm3) | 11,666 ± 6,683 | 11,906 ± 6,528 | 11,464 ± 6,889 | 0.782 | 12,407 ± 6,571 | 8,305 ± 6,373 |
| 10,926 ± 6,014 | 12,407 ± 7,300 | 0.351 |
| Eosinophils (mm3) | 94.96 ± 260.01 | 66.70 ± 145.5 | 118.87 ± 327.42 | 0.4 | 88.73 ± 235.2 | 123.23 ± 362.74 | 0.668 | 155.06 ± 350.84 | 34.86 ± 81.39 |
|
| Basophils (mm3) | 9.47 ± 51.01 | 16.82 ± 74.69 | 3.26 ± 8.83 | 0.264 | 3.02 ± 10.94 | 38.77 ± 116.98 |
| 15.33 ± 71.04 | 3.61 ± 12.72 | 0.333 |
| Monocytes (mm3) | 880.54 ± 875.84 | 954.70 ± 971.88 | 816.13 ± 790.69 | 0.510 | 958.73 ± 921.19 | 496.08 ± 461.64 | 0.096 | 931.71 ± 999.87 | 830.78 ± 746.90 | 0.631 |
| Lymphocytes (mm3) | 1,451 ± 1,097 | 1,525 ± 1,041 | 1,389 ± 1,153 | 0.604 | 1,536 ± 1,167 | 1,065 ± 590.44 | 0.163 | 1,548 ± 1,292 | 1,354 ± 869.27 | 0.455 |
| CRP (mg/dL) | 273.08 ± 131.79 | 259.3 ± 140.68 | 284.75 ± 124.43 | 0.418 | 274.30 ± 131.45 | 267.53 ± 138.61 | 0.868 | 249.26 ± 133.53 | 296.90 ± 127.43 | 0.126 |
| Lactic acid (mg/dL) | 3.23 ± 2.78 | 3.42 ± 3.07 | 3.06 ± 2.53 | 0.590 | 2.87 ± 2.58 | 4.84 ± 3.18 |
| 3.76 ± 3.16 | 2.69 ± 2.26 | 0.103 |
a-c: p-values from comparison between severe sepsis vs. septic shock, survivors vs. nonsurvivors and Acute Physiology and Chronic Health Evaluation II score (APACHE) > 25 vs. APACHE < 25, respectively; CRP: C-reactive protein; ICU: intensive care unit; n: the absolute values; NA: not applicable, except where otherwise shown, values are displayed as average ± standard deviation; SOFA: Sequential Organ Failure Assessment score. Values in bold were considered statistically significant.
Association analysis of single nucleotide polymorphisms (SNPs) between sepsis patients
| Gene (SNP) | Sepsis n (%) | Severe sepsis n (%) | Septic shock n (%) | OR (95% CI) | p |
|---|---|---|---|---|---|
|
| |||||
| AA | 49 (71.01) | 22 (68.75) | 27 (72.97) | 1 | 0.700 |
| AC | 20 (28.99) | 10 (31.25) | 10 (27.03) | 0.81 (0.28-2.30) | |
| CC | 0 (0) | 0 (0) | 0 (0) | NA | |
| A | 118 (85.5) | 54 (84.38) | 64 (86.49) | 1 | 0.725 |
| C | 20 (14.5) | 10 (15.62) | 10 (13.51) | 0.84 (0.32-2.17) | |
|
| |||||
| CC | 34 (49.28) | 12 (37.5) | 22 (59.46) | 1 | 0.0617 |
| CT | 29 (42.03) | 15 (46.88) | 14 (37.84) | 0.51 (0.18-1.40) | |
| TT | 6 (8.7) | 5 (15.62) | 1 (2.7) | 0.11 (0.01-1.04) | |
| C | 97 (70.29) | 39 (60.94) | 58 (78.38) | 1 |
|
| T | 41 (29.71) | 25 (39.06) | 16 (21.62) | 0.43 (0.20-0.90) | |
|
| |||||
| AA | 16 (23.19) | 8 (25) | 8 (21.62) | 1 | 0.1045 |
| AG | 27 (39.13) | 16 (50) | 11 (29.73) | 0.69 (0.19-2.38) | |
| GG | 26 (37.68) | 8 (25) | 18 (48.65) | 2.25 (0.62-8.14) | |
| A | 59 (42.75) | 32 (5) | 27 (36.49) | 1 | 0.109 |
| G | 79 (57.25) | 32 (5) | 47 (63.51) | 1.74 (0.88-3.44) | |
|
| |||||
| GG | 49 (71.01) | 24 (75) | 25 (67.57) | 1 | 0.758 |
| GA | 18 (26.09) | 7 (21.9) | 11 (29.73) | 1.51 (0.50-4.53) | |
| AA | 2 (2.9) | 1 (3.1) | 1 (2.7) | 0.96 (0.05-16.23) | |
| G | 116 (84) | 55 (85.94) | 61 (82.43) | 1 | 0.573 |
| A | 22 (15.94) | 9 (14.06) | 13 (17.57) | 1.30 (0.51-3.28) | |
|
| |||||
| GG | 20 (28.99) | 7 (21.88) | 13 (35.14) | 1 | 0.459 |
| GT | 38 (55.07) | 19 (59.37) | 19 (51.35) | 0.54 (0.17-1.64) | |
| TT | 11 (15.94) | 6 (18.75) | 5 (13.51) | 0.45 (0.1-2.01) | |
| G | 78 (56.52) | 33 (51.56) | 45 (60.81) | 1 | 0.274 |
| T | 60 (43.48) | 31 (48.44) | 29 (39.19) | 0.69 (0.34-1.35) | |
|
| |||||
| AA | 33 (47.83) | 9 (28.1) | 24 (64.86) | 1 |
|
| vAG | 51 (44.93) | 20 (62.5) | 11 (29.73) | 0.21 (0.07-0.59) | |
| GG | 5 (7.24) | 3 (9.4) | 2 (5.4) | 0.25 (0.03-1.75) | |
| A | 97 (70.29) | 38 (59.38) | 59 (79.73) | 1 |
|
| G | 41 (29.71) | 26 (40.62) | 15 (20.27) | 0.37 (0.17-0.79) | |
|
| |||||
| GG | 54 (78.26) | 26 (81.26) | 28 (75.68) | 1 | 0.323 |
| GA | 14 (20.29) | 5 (15.62) | 9 (24.32) | 1.67 (0.49-5.64) | |
| AA | 1 (1.44) | 1 (3.12) | 0 (0) | NA | |
| G | 122 (88.4) | 57 (89.06) | 65 (87.84) | 1 | 0.822 |
| A | 16 (11.6) | 7 (10.94) | 9 (12.16) | 1.13 (0.39-3.22) |
a, b: genotype and allele comparisons, respectively; CI: confidence interval; IL: interleukin; n: absolute values; NA: not applicable; OR: odds ratio; TLR: Toll-like receptor; TNF: tumour necrosis factor. Values in bold were considered statistically significant.
Association analysis of single nucleotide polymorphisms (SNPs) between survivors and nonsurvivors and APACHE > 25 of severe sepsis patients
| Gene (SNP) | Nonsurvivor n (%) | Survivor n (%) | OR (95% CI) | p | APACHE > 25 n (%) | APACHE < 25 n (%) | OR (95% CI) | p |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| AA | 7 (53.85) | 42 (75) | 1 | 0.142 | 22 (62.86) | 27 (79.41) | 1 | 0.127 |
| AC | 6 (46.15) | 14 (25) | 2.57 (0.73-8.94) | 13 (37.14) | 7 (20.59) | 2.27 (0.77-6.69) | ||
| CC | 0 (0) | 0 (0) | - | 0 (0) | 0 (0) | - | ||
| A | 20 (76.29) | 98 (87.5) | 1 | 0.189 | 57 (81.43) | 61 (89.71) | 1 | 0.1643 |
| C | 6 (23.08) | 14 (12.5) | 2.1 (0.72-6.12) | 13 (18.57) | 7 (10.29) | 1.98 (0.74-5.33) | ||
|
| ||||||||
| CC | 7 (53.85) | 27 (48.21) | 1 | 0.934 | 18 (51.43) | 16 (47.06) | 1 | 0.933 |
| CT | 5 (38.46) | 24 (42.86) | 0.80 (0.22-2.86) | 14 (4) | 15 (44.12) | 0.82 (0.30-2.23) | ||
| TT | 1 (7.69) | 5 (8.93) | 0.77 (0.07-7.71) | 3 (8.57) | 3 (8.88) | 0.88 (0.15-5.04) | ||
| C | 19 (73.08) | 78 (69.64) | 1 | 0.728 | 50 (71.43) | 47 (69.12) | 1 | 0.7665 |
| T | 7 (26.92) | 34 (30.36) | 0.84 (0.31-2.19) | 20 (28.57) | 21 (30.88) | 0.89 (0.43-1.85) | ||
|
| ||||||||
| AA | 2 (15.38) | 14 (25) | 1 | 0.410 | 8 (22.86) | 8 (23.53) | 1 | 0.314 |
| AG | 4 (30.77) | 23 (41.07) | 1.21 (0.19-7.53) | 11 (31.43) | 16 (47.06) | 0.68 (0.19-2.38) | ||
| GG | 7 (53.85) | 19 (33.93) | 2.57 (0.46-14.35) | 16 (45.71) | 10 (29.41) | 1.6 (0.45-5.63) | ||
| A | 8 (30.77) | 51 (45.54) | 1 | 0.164 | 27 (38.57) | 32 (47.06) | 1 | 0.3134 |
| G | 18 (69.23) | 61 (54.46) | 1.88 (0.75-4.68) | 43 (61.43) | 36 (52.94) | 1.42 (0.72-2.78) | ||
|
| ||||||||
| GG | 11 (84.62) | 38 (67.86) | 1 | 0.129 | 30 (85.71) | 19 (55.88) | 1 |
|
| GA | 1 (7.69) | 17 (30.36) | 0.20 (0.02-1.70) | 4 (11.43) | 14 (41.18) | 0.18 (0.05-0.63) | ||
| AA | 1 (7.69) | 1 (1.78) | 3.45 (0.19-59.84) | 1 (2.85) | 1 (2.94) | 0.63 (0.03-10.74) | ||
| G | 23 (88.46) | 93 (83.04) | 1 | 0.481 | 64 (91.43) | 52 (76.47) | 1 |
|
| A | 3 (11.54) | 19 (16.96) | 0.63 (0.17-2.34) | 6 (8.57) | 16 (23.53) | 0.30 (0.11-0.83) | ||
|
| ||||||||
| GG | 2 (15.38) | 18 (32.14) | 1 | 0.412 | 11 (31.43) | 9 (26.47) | 1 | 0.870 |
| GT | 8 (61.54) | 30 (53.57) | 2.4 (0.45-12.57) | 19 (54.29) | 19 (55.88) | 0.81 (0.27-2.42) | @ | |
| TT | 3 (23.08) | 8 (14.29) | 3.37 (0.46-24.29) | 5 (14.29) | 6 (17.65) | 0.68 (0.15-2.98) | ||
| G | 12 (46.15) | 66 (58.93) | 1 | 0.238 | 41 (58.57) | 37 (54.41) | 1 | 0.6221 |
| T | 14 (53.85) | 46 (41.07) | 1.67 (0.70-3.94) | 29 (41.43) | 31 (45.59) | 0.84 (0.43-1.65) | ||
|
| ||||||||
| TT | 27 (48.21) | 6 (46.15) | 1 | 0.306 | 15 (42.86) | 18 (52.94) | 1 | 0.687 |
| TC | 24 (42.86) | 7 (53.85) | 1.31 (0.38-4.45) | 17 (48.57) | 14 (41.18) | 0.68 (0.19-2.38) | ||
| CC | 5 (8.93) | 0 (0) | NA | 3 (8.57) | 2 (5.88) | 1.6 (0.45-5.63) | ||
| T | 19 (73.08) | 78 (69.64) | 1 | 0.728 | 47 (67.14) | 50 (73.53) | 1 | 0.4113 |
| C | 7 (26.92) | 34 (30.36) | 0.84 (0.32-2.19) | 23 (32.86) | 18 (26.47) | 1.35 (0.65-2.83) | ||
|
| ||||||||
| GG | 10 (76.92) | 44 (78.57) | 1 | 0.1699 | 27 (77.14) | 27 (79.41) | 1 | 0.5036 |
| GA | 2 (15.38) | 12 (21.43) | 0.73 (0.14-3.80) | 7 (0.2) | 7 (0.2) | 1 (3.0-3.24) | ||
| AA | 1 (7.7) | 0 (0) | NA | 1 (0.02) | 0 (0) | NA | ||
| G | 22 (84.62) | 100 (89.29) | 1 | 0.5163 | 61 (87.14) | 61 (89.71) | 1 | 0.6378 |
| A | 4 (15.38) | 12 (10.71) | 1.28 (0.45-3.67) | 9 (12.86) | 7 (10.29) | 1.28 (0.45-3.67) |
a, b: p-values from comparison between survivors vs. nonsurvivors and Acute Physiology and Chronic Health Evaluation II score (APACHE) > 25 vs. APACHE < 25, respectively; c, d: genotype and allele comparisons, respectively; CI: confidence interval; IL: interleukin; n: the absolute values; NA: not applicable; OR: odds ratio; TLR: Toll-like receptor; TNF: tumour necrosis factor. Values in bold were considered statistically significant.