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Literature DB >> 26036567

Exposing the secrets of sex determination.

Remo Rohs¹, Ana Carolina Dantas Machado¹, Lin Yang¹.

Abstract

Mesh：

Substances：
Transcription Factors
DNA

Year: 2015 PMID： 26036567 DOI： 10.1038/nsmb.3042

Source DB: PubMed Journal: Nat Struct Mol Biol ISSN： 1545-9985 Impact factor: 15.369

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15 in total

1. Sequence-specific recognition of double helical nucleic acids by proteins.

Authors: N C Seeman; J M Rosenberg; A Rich
Journal: Proc Natl Acad Sci U S A Date: 1976-03 Impact factor: 11.205

2. Quantitative modeling of transcription factor binding specificities using DNA shape.

Authors: Tianyin Zhou; Ning Shen; Lin Yang; Namiko Abe; John Horton; Richard S Mann; Harmen J Bussemaker; Raluca Gordân; Remo Rohs
Journal: Proc Natl Acad Sci U S A Date: 2015-03-09 Impact factor: 11.205

Review 3. Absence of a simple code: how transcription factors read the genome.

Authors: Matthew Slattery; Tianyin Zhou; Lin Yang; Ana Carolina Dantas Machado; Raluca Gordân; Remo Rohs
Journal: Trends Biochem Sci Date: 2014-08-14 Impact factor: 13.807

4. Modeling the specificity of protein-DNA interactions.

Authors: Gary D Stormo
Journal: Quant Biol Date: 2013-06

5. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.

Authors: Ho Sung Rhee; B Franklin Pugh
Journal: Cell Date: 2011-12-09 Impact factor: 41.582

6. Dmrt1, a gene related to worm and fly sexual regulators, is required for mammalian testis differentiation.

Authors: C S Raymond; M W Murphy; M G O'Sullivan; V J Bardwell; D Zarkower
Journal: Genes Dev Date: 2000-10-15 Impact factor: 11.361

7. Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape.

Authors: Raluca Gordân; Ning Shen; Iris Dror; Tianyin Zhou; John Horton; Remo Rohs; Martha L Bulyk
Journal: Cell Rep Date: 2013-04-04 Impact factor: 9.423

Exposing the secrets of sex determination.

1. Sequence-specific recognition of double helical nucleic acids by proteins.

2. Quantitative modeling of transcription factor binding specificities using DNA shape.

Review 3. Absence of a simple code: how transcription factors read the genome.

4. Modeling the specificity of protein-DNA interactions.

5. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.

6. Dmrt1, a gene related to worm and fly sexual regulators, is required for mammalian testis differentiation.

7. Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape.

8. Unraveling determinants of transcription factor binding outside the core binding site.

9. ChIP-nexus enables improved detection of in vivo transcription factor binding footprints.

10. The role of DNA shape in protein-DNA recognition.

Review 1. DNA-protein interaction: identification, prediction and data analysis.

2. DNAproDB: an interactive tool for structural analysis of DNA-protein complexes.