| Literature DB >> 26034762 |
Mary J Burgess1, James R Johnson2, Stephen B Porter2, Brian Johnston3, Connie Clabots4, Brian D Lahr5, James R Uhl5, Ritu Banerjee5.
Abstract
Background. Emerging data implicate long-term care facilities (LTCFs) as reservoirs of fluoroquinolone-resistant (FQ-R) Escherichia coli of sequence type 131 (ST131). We screened for ST131 among LTCF residents, characterized isolates molecularly, and identified risk factors for colonization. Methods. We conducted a cross-sectional study using a single perianal swab or stool sample per resident in 2 LTCFs in Olmsted County, Minnesota, from April to July 2013. Confirmed FQ-R E. coli isolates underwent polymerase chain reaction-based phylotyping, detection of ST131 and its H30 and H30-Rx subclones, extended virulence genotyping, and pulsed-field gel electrophoresis (PFGE) analysis. Epidemiological data were collected from medical records. Results. Of 133 fecal samples, 33 (25%) yielded FQ-R E. coli, 32 (97%) of which were ST131. The overall proportion with ST131 intestinal colonization was 32 of 133 (24%), which differed by facility: 17 of 41 (42%) in facility 1 vs 15 of 92 (16%) in facility 2 (P = .002). All ST131 isolates represented the H30 subclone, with virulence gene and PFGE profiles resembling those of previously described ST131 clinical isolates. By PFGE, certain isolates clustered both within and across LTCFs. Multivariable predictors of ST131 colonization included inability to sign consent (odds ratio [OR], 4.16 [P = .005]), decubitus ulcer (OR, 4.87 [ P = .04]), and fecal incontinence (OR, 2.59 [P = .06]). Conclusions. Approximately one fourth of LTCF residents carried FQ-R ST131 E. coli resembling ST131 clinical isolates. Pulsed-field gel electrophoresis suggested intra- and interfacility transmission. The identified risk factors suggest that LTCF residents who require increased nursing care are at greatest risk for ST131 colonization, possibly due to healthcare-associated transmission.Entities:
Keywords: E. coli; E. coli resistance; ST131; long-term care facilities
Year: 2015 PMID: 26034762 PMCID: PMC4438892 DOI: 10.1093/ofid/ofv011
Source DB: PubMed Journal: Open Forum Infect Dis ISSN: 2328-8957 Impact factor: 3.835
Molecular Characteristics of Colonizing ST131 Isolates From Long-Term Care Facility Residents in Olmsted County, Minnesota
| Category | Specific Characteristic (Definition)a | Prevalence Within ST131, No. of Isolates (% of 32) |
|---|---|---|
| O type | O25b ( | 30 (94) |
| ST131 subclonal group | H30 (fluoroquinolone resistance-associated) | 32 (100) |
| 9 (28) | ||
| Adhesin | 26 (81) | |
| 32 (100) | ||
| Toxin | 2 (6) | |
| 26 (81) | ||
| Siderophore receptor | 32 (100) | |
| 26 (81) | ||
| Protectin | 17 (53) | |
| 16 (50) | ||
| K2/K100 (capsule variants) | 1 (3) | |
| 25 (78) | ||
| Other virulence genes | 32 (100) | |
| 32 (100) | ||
| 30 (94) |
Abbreviations: ESBL, extended-spectrum-beta-lactamase; ST131, sequence type 131.
a Molecular characteristics not observed include the following (trait definition): afa/draBC (Dr-binding adhesins), afaE8 (variant afimbrial adhesin), astA (toxin of enteroaggregative Escherichia coli), cdtB (cytolethal distending toxin), bmaE (M fimbriae), clbB and clbN (colibactin polyketide synthesis), clpG (variant adhesin), cvaC (microcin V), F17 (variant adhesin), focG (F1C fimbriae adhesin), gafD (G fimbriae), H7 fliC (flagellar variant), hlyD (alpha hemolysin), hlyF (variant hemolysin), hra (heat-resistant agglutinin), ibeA (invasion of brain endothelium), ireA (siderophore receptor), iroN (salmochelin receptor), iss (increased serum survival), K1 and K15 (group 2 capsule variants), kpsMT III (group 3 capsules), papAH, papC, papEF, papG, and papG alleles I, II, and III (P fimbriae structural subunits, assembly, and tip adhesin variants), pic (protein associated with intestinal colonization), rfc (O4 lipopolysaccharide synthesis), sfa/focDE (S and F1C fimbriae), sfaS (S fimbriae adhesin), tsh (temperature-sensitive hemagglutinin), vat (vacuolating toxin).
Figure 1.Dendrogram of pulsotype 968 sequence type 131 isolates. XbaI pulsed-gel electrophoresis (PFGE) profiles of long-term care facility (LTCF) colonization isolates are compared with those of previously characterized clinical isolates from a large private PFGE library (J. R. J.). Arrows denote isolates from LTCF residents. ID, strain identifier. Sample, specimen type or context.
Figure 2.Dendrogram of pulsotype 800 sequence type 131 isolates. XbaI pulsed-gel electrophoresis (PFGE) profiles of long-term care facility (LTCF) colonization isolates are compared with those of previously characterized clinical isolates from a large private PFGE library (J. R. J.). Arrows denote isolates from LTCF residents. ID, strain identifier. Sample, specimen type or context.
Figure 3.Dendrogram of pulsotype 911, 837, 905, and 941 sequence type 131 isolates. XbaI pulsed-gel electrophoresis (PFGE) profiles of long-term care facility (LTCF) colonization isolates are compared with those of previously characterized clinical isolates from a large private PFGE library (J. R. J.). Arrows denote isolates from LTCF residents. ID, strain identifier. Sample, specimen type or context.
Univariable Analysis of Potential Risk Factors for Escherichia coli ST131 Colonization Among 132 Long-Term Care Facility Residents in Olmsted County, Minnesota
| Variable | FQ-R ST131 | No FQ-R | Odds Ratio (95% CI) | |
|---|---|---|---|---|
| Age (years), mean (SD) | 83.2 ± 8.5 | 81.6 ± 14.1 | 1.01 (0.98, 1.05) | .56 |
| Male gender | 11 (34%) | 35 (35%) | 0.97 (0.42, 2.25) | .95 |
| Specific facility | .002 | |||
| Facility 1 | 17 (53%) | 23 (23%) | 3.79 (1.64, 8.75) | |
| Facility 2 | 15 (47%) | 77 (77%) | 1.0 (Referent) | |
| Time in long-term care facility (years)a | 1.8 (1.1, 4.3) | 1.2 (0.3, 2.4) | 1.49 (1.05, 2.11) | .03 |
| Level of care: | .01 | |||
| Long-term care | 24 (75%) | 74 (74%) | 1.0 (Referent) | |
| Subacute care | 3 (9%) | 25 (25%) | 0.37 (0.10, 1.33) | |
| Memory unit | 5 (16%) | 1 (1%) | 15.42 (1.72, 138.56) | |
| Unable to sign consent | 16 (50%) | 16 (16%) | 5.25 (2.19, 12.60) | <.001 |
| Urinary catheter | 3 (9%) | 8 (8%) | 1.19 (0.30, 4.78) | .81 |
| Urinary incontinence | 23 (72%) | 48 (48%) | 2.77 (1.17, 6.57) | .02 |
| Fecal incontinence | 18 (56%) | 19 (19%) | 5.48 (2.32, 12.94) | <.001 |
| Dialysis | 1 (3%) | 3 (3%) | 1.33 (0.13, 8.43) | .78b |
| Corticosteroids in prior 6 mo | 7 (22%) | 15 (15%) | 1.59 (0.58, 4.32) | .37 |
| 0 (0%) | 1 (1%) | 1.03 (<0.01, 19.62) | .99b | |
| Chronic kidney disease | 5 (16%) | 25 (25%) | 0.56 (0.19, 1.60) | .28 |
| Diabetes mellitus | 5 (16%) | 26 (26%) | 0.53 (0.18, 1.51) | .23 |
| Ostomy tube | 3 (9%) | 4 (4%) | 2.54 (0.54, 11.06) | .22b |
| Decubitus ulcer | 6 (19%) | 4 (4%) | 5.54 (1.45, 21.09) | .01 |
| Chronic wound | 2 (6%) | 10 (10%) | 0.60 (0.12, 2.89) | .53 |
| Hospitalized in prior 6 mo | 13 (41%) | 48 (48%) | 0.74 (0.33, 1.66) | .47 |
| Antibiotics in prior 6 mo | 18 (56%) | 56 (56%) | 1.01 (0.45, 2.25) | .98 |
| Days of antibiotics in prior 6 mo: | .32 | |||
| 0 | 14 (44%) | 44 (44%) | 1.17 (0.39, 3.45) | |
| 1–7 | 6 (19%) | 22 (22%) | 1.0 (Referent) | |
| 8–14 | 4 (13%) | 17 (17%) | 0.86 (0.21, 3.55) | |
| 15–28 | 6 (19%) | 6 (6%) | 3.67 (0.86, 15.59) | |
| >28 | 2 (6%) | 10 (10%) | 0.73 (0.13, 4.29) |
Abbreviations: CI, confidence interval; FQ-R, fluoroquinolone-resistant; IQR, interquartile range; SD, standard deviation; ST131, sequence type 131.
a Median (IQR) reported due to skewed distribution; effect measured in logistic regression based on log-transformed data.
b Due to sparse data, we used Firth's correction to estimate the odds ratio (displayed along with profile likelihood-based 95% CIs) and the likelihood ratio test to assess the effect's significance.
Multivariable Analysis of Risk Factors for Intestinal Colonization With ST131 Among LTCF Residents in Olmsted County, Minnesota
| Variable | OR (95% CI) | |
|---|---|---|
| Time in LTCFa (log-years) | 1.20 (0.81, 1.77) | .36 |
| Unable to sign consent | 4.16 (1.53, 11.30) | .005 |
| Decubitus ulcer | 4.87 (1.06, 22.26) | .04 |
| Fecal incontinence | 2.59 (0.95, 7.06) | .06 |
Abbreviations: CI, confidence interval; LTCF, long-term care facility; OR, odds ratio.
a Data were log-transformed to approximate a normal distribution.