Literature DB >> 26029428

Crystal structure of 2-(4-fluoro-3-methyl-phen-yl)-5-{[(naphthalen-1-yl)-oxy]meth-yl}-1,3,4-oxa-diazole.

Muniyappan Govindhan1, Kathavarayan Subramanian2, Vijayan Viswanathan3, Devadasan Velmurugan3.   

Abstract

The title compound, C20H15FN2O2, adopts an almost planar conformation. The oxa-diazole ring makes dihedral angles of 13.90 (1) and 7.93 (1)° with the naphthalene ring system and benzene ring, respectively, while the naphthalene ring system and benzene ring are inclined to one another by 6.35 (1)°. In the crystal, adjacent mol-ecules are linked via C-H⋯N hydrogen bonds, forming chains propagating along [100]. There are also π-π inter-actions present [inter-centroid distances = 3.5754 (9) and 3.7191 (12) Å], linking the chains to form ribbons lying parallel to (011).

Entities:  

Keywords:  crystal structure; hydrogen bonding; naphthalene; oxa­diazole; triazole; π–π inter­actions

Year:  2015        PMID: 26029428      PMCID: PMC4438827          DOI: 10.1107/S2056989015004144

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activities of triazole derivatives, see: Desai et al. (2014 ▸), Khalilullah et al. (2012 ▸), Bethge et al. (2005 ▸); Saha et al. (2013 ▸); Shailaja et al. (2010 ▸); Sun et al. (2013 ▸).

Experimental

Crystal data

C20H15FN2O2 M = 334.34 Triclinic, a = 7.4236 (4) Å b = 7.5062 (4) Å c = 16.3519 (8) Å α = 77.092 (3)° β = 77.494 (3)° γ = 66.734 (3)° V = 807.51 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.20 × 0.15 × 0.10 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.981, T max = 0.990 11476 measured reflections 3368 independent reflections 2306 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.134 S = 1.05 3368 reflections 227 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.22 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAINT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015004144/su5076sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015004144/su5076Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015004144/su5076Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015004144/su5076fig1.tif The mol­ecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015004144/su5076fig2.tif The crystal packing of the title compound, viewed along the b axis. Hydrogen bonds are shown as dashed lines (see Table 1 for details). H atoms not involved in hydrogen bonds have been omitted for clarity. CCDC reference: 1051477 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H15FN2O2Z = 2
Mr = 334.34F(000) = 348
Triclinic, P1Dx = 1.375 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4236 (4) ÅCell parameters from 3368 reflections
b = 7.5062 (4) Åθ = 1.3–26.6°
c = 16.3519 (8) ŵ = 0.10 mm1
α = 77.092 (3)°T = 293 K
β = 77.494 (3)°Block, colourless
γ = 66.734 (3)°0.20 × 0.15 × 0.10 mm
V = 807.51 (7) Å3
Bruker SMART APEXII area-detector diffractometer3368 independent reflections
Radiation source: fine-focus sealed tube2306 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
ω and φ scansθmax = 26.6°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→9
Tmin = 0.981, Tmax = 0.990k = −9→9
11476 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0629P)2 + 0.1875P] where P = (Fo2 + 2Fc2)/3
3368 reflections(Δ/σ)max = 0.001
227 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2815 (2)0.9674 (2)0.27299 (10)0.0380 (4)
C20.0947 (3)1.0312 (3)0.24700 (11)0.0458 (4)
H2−0.01261.01790.28600.055*
C30.0698 (3)1.1126 (3)0.16502 (12)0.0559 (5)
H3−0.05491.15600.14860.067*
C40.2302 (3)1.1315 (3)0.10517 (12)0.0585 (5)
H40.21191.18530.04920.070*
C50.4113 (3)1.0721 (3)0.12833 (11)0.0542 (5)
H50.51621.08650.08810.065*
C60.4443 (3)0.9883 (3)0.21265 (11)0.0443 (4)
C70.6314 (3)0.9262 (3)0.23862 (12)0.0550 (5)
H70.73840.93870.19930.066*
C80.6573 (3)0.8484 (3)0.32022 (13)0.0572 (5)
H80.78170.80930.33630.069*
C90.4991 (3)0.8257 (3)0.38106 (11)0.0486 (4)
H90.51840.77380.43710.058*
C100.3179 (2)0.8801 (2)0.35759 (10)0.0400 (4)
C110.1845 (3)0.7566 (3)0.49454 (10)0.0460 (4)
H11A0.20940.83420.52790.055*
H11B0.29680.63380.49210.055*
C120.0001 (3)0.7192 (2)0.53259 (10)0.0427 (4)
C13−0.1993 (3)0.6253 (2)0.62939 (11)0.0430 (4)
C14−0.2765 (3)0.5508 (2)0.71406 (11)0.0444 (4)
C15−0.4706 (3)0.5567 (3)0.72898 (13)0.0577 (5)
H15−0.54870.60740.68570.069*
C16−0.5456 (3)0.4863 (3)0.80897 (15)0.0678 (6)
H16−0.67470.48850.82030.081*
C17−0.4279 (4)0.4138 (3)0.87090 (13)0.0653 (6)
C18−0.2365 (4)0.4046 (3)0.85990 (12)0.0590 (5)
C19−0.1633 (3)0.4763 (3)0.77889 (11)0.0505 (5)
H19−0.03410.47360.76830.061*
C20−0.1144 (4)0.3226 (4)0.93077 (13)0.0871 (8)
H20A−0.17270.40330.97470.131*
H20B0.01760.32040.90980.131*
H20C−0.10960.19150.95330.131*
F1−0.5067 (3)0.3450 (2)0.94919 (8)0.0999 (6)
N1−0.1472 (2)0.7432 (2)0.49750 (9)0.0555 (4)
N2−0.2797 (2)0.6806 (2)0.56191 (9)0.0545 (4)
O10.15466 (17)0.86032 (18)0.41174 (7)0.0494 (3)
O2−0.01882 (18)0.64483 (17)0.61616 (7)0.0440 (3)
U11U22U33U12U13U23
C10.0433 (10)0.0364 (8)0.0348 (8)−0.0165 (7)−0.0051 (7)−0.0032 (6)
C20.0467 (11)0.0496 (10)0.0438 (10)−0.0229 (9)−0.0085 (8)−0.0004 (8)
C30.0602 (13)0.0593 (12)0.0522 (11)−0.0256 (10)−0.0218 (9)0.0038 (9)
C40.0791 (15)0.0614 (12)0.0368 (10)−0.0317 (11)−0.0148 (9)0.0066 (8)
C50.0635 (13)0.0584 (12)0.0397 (10)−0.0297 (10)−0.0001 (9)0.0012 (8)
C60.0482 (11)0.0431 (9)0.0416 (9)−0.0203 (8)−0.0020 (8)−0.0040 (7)
C70.0457 (11)0.0655 (12)0.0529 (11)−0.0267 (10)0.0010 (8)−0.0028 (9)
C80.0449 (11)0.0699 (13)0.0590 (12)−0.0262 (10)−0.0115 (9)−0.0007 (10)
C90.0493 (11)0.0568 (11)0.0413 (9)−0.0225 (9)−0.0141 (8)0.0024 (8)
C100.0416 (10)0.0428 (9)0.0353 (8)−0.0175 (8)−0.0043 (7)−0.0026 (7)
C110.0509 (11)0.0511 (10)0.0330 (9)−0.0198 (9)−0.0069 (7)0.0028 (7)
C120.0540 (11)0.0421 (9)0.0311 (8)−0.0189 (8)−0.0070 (7)−0.0003 (7)
C130.0476 (11)0.0390 (9)0.0421 (10)−0.0176 (8)−0.0045 (8)−0.0043 (7)
C140.0532 (11)0.0383 (9)0.0402 (9)−0.0188 (8)0.0002 (8)−0.0055 (7)
C150.0552 (12)0.0541 (11)0.0633 (13)−0.0235 (10)−0.0006 (9)−0.0088 (9)
C160.0651 (14)0.0620 (13)0.0748 (15)−0.0338 (12)0.0202 (12)−0.0167 (11)
C170.0882 (17)0.0523 (12)0.0489 (12)−0.0346 (12)0.0231 (11)−0.0099 (9)
C180.0824 (16)0.0473 (11)0.0391 (10)−0.0205 (11)0.0018 (9)−0.0066 (8)
C190.0581 (12)0.0486 (10)0.0405 (10)−0.0197 (9)0.0009 (8)−0.0057 (8)
C200.123 (2)0.0851 (17)0.0403 (12)−0.0314 (16)−0.0105 (13)0.0024 (11)
F10.1377 (14)0.0909 (10)0.0602 (8)−0.0597 (10)0.0404 (8)−0.0094 (7)
N10.0603 (11)0.0690 (11)0.0386 (8)−0.0302 (9)−0.0109 (7)0.0055 (7)
N20.0563 (10)0.0671 (10)0.0434 (9)−0.0298 (9)−0.0114 (7)0.0031 (7)
O10.0425 (7)0.0639 (8)0.0348 (6)−0.0199 (6)−0.0047 (5)0.0066 (5)
O20.0510 (8)0.0498 (7)0.0314 (6)−0.0222 (6)−0.0061 (5)0.0010 (5)
C1—C21.405 (2)C11—H11B0.9700
C1—C61.422 (2)C12—N11.276 (2)
C1—C101.426 (2)C12—O21.3552 (19)
C2—C31.363 (2)C13—N21.277 (2)
C2—H20.9300C13—O21.371 (2)
C3—C41.401 (3)C13—C141.456 (2)
C3—H30.9300C14—C191.376 (3)
C4—C51.349 (3)C14—C151.393 (3)
C4—H40.9300C15—C161.381 (3)
C5—C61.412 (2)C15—H150.9300
C5—H50.9300C16—C171.359 (3)
C6—C71.408 (3)C16—H160.9300
C7—C81.354 (3)C17—F11.367 (2)
C7—H70.9300C17—C181.368 (3)
C8—C91.405 (3)C18—C191.393 (3)
C8—H80.9300C18—C201.497 (3)
C9—C101.357 (2)C19—H190.9300
C9—H90.9300C20—H20A0.9600
C10—O11.376 (2)C20—H20B0.9600
C11—O11.418 (2)C20—H20C0.9600
C11—C121.482 (2)N1—N21.412 (2)
C11—H11A0.9700
C2—C1—C6119.18 (15)H11A—C11—H11B108.7
C2—C1—C10123.22 (15)N1—C12—O2113.17 (16)
C6—C1—C10117.60 (16)N1—C12—C11129.27 (15)
C3—C2—C1120.36 (17)O2—C12—C11117.55 (15)
C3—C2—H2119.8N2—C13—O2112.28 (15)
C1—C2—H2119.8N2—C13—C14128.39 (17)
C2—C3—C4120.63 (19)O2—C13—C14119.32 (15)
C2—C3—H3119.7C19—C14—C15119.73 (17)
C4—C3—H3119.7C19—C14—C13121.76 (17)
C5—C4—C3120.33 (17)C15—C14—C13118.51 (18)
C5—C4—H4119.8C16—C15—C14119.1 (2)
C3—C4—H4119.8C16—C15—H15120.4
C4—C5—C6121.17 (17)C14—C15—H15120.4
C4—C5—H5119.4C17—C16—C15119.0 (2)
C6—C5—H5119.4C17—C16—H16120.5
C7—C6—C5122.32 (17)C15—C16—H16120.5
C7—C6—C1119.36 (16)C16—C17—F1117.4 (2)
C5—C6—C1118.31 (17)C16—C17—C18124.44 (19)
C8—C7—C6120.77 (17)F1—C17—C18118.2 (2)
C8—C7—H7119.6C17—C18—C19115.8 (2)
C6—C7—H7119.6C17—C18—C20121.8 (2)
C7—C8—C9121.02 (18)C19—C18—C20122.3 (2)
C7—C8—H8119.5C14—C19—C18121.9 (2)
C9—C8—H8119.5C14—C19—H19119.0
C10—C9—C8119.62 (17)C18—C19—H19119.0
C10—C9—H9120.2C18—C20—H20A109.5
C8—C9—H9120.2C18—C20—H20B109.5
C9—C10—O1124.18 (15)H20A—C20—H20B109.5
C9—C10—C1121.59 (16)C18—C20—H20C109.5
O1—C10—C1114.23 (14)H20A—C20—H20C109.5
O1—C11—C12106.29 (14)H20B—C20—H20C109.5
O1—C11—H11A110.5C12—N1—N2105.94 (14)
C12—C11—H11A110.5C13—N2—N1106.37 (15)
O1—C11—H11B110.5C10—O1—C11117.26 (13)
C12—C11—H11B110.5C12—O2—C13102.25 (13)
C6—C1—C2—C3−0.1 (2)O2—C13—C14—C15171.45 (15)
C10—C1—C2—C3−179.64 (16)C19—C14—C15—C16−0.3 (3)
C1—C2—C3—C40.8 (3)C13—C14—C15—C16179.90 (16)
C2—C3—C4—C5−1.1 (3)C14—C15—C16—C170.2 (3)
C3—C4—C5—C60.6 (3)C15—C16—C17—F1−179.84 (17)
C4—C5—C6—C7−179.61 (19)C15—C16—C17—C18−0.1 (3)
C4—C5—C6—C10.2 (3)C16—C17—C18—C190.2 (3)
C2—C1—C6—C7179.40 (16)F1—C17—C18—C19179.88 (16)
C10—C1—C6—C7−1.1 (2)C16—C17—C18—C20−179.9 (2)
C2—C1—C6—C5−0.4 (2)F1—C17—C18—C20−0.2 (3)
C10—C1—C6—C5179.18 (15)C15—C14—C19—C180.3 (3)
C5—C6—C7—C8179.28 (18)C13—C14—C19—C18−179.86 (16)
C1—C6—C7—C8−0.5 (3)C17—C18—C19—C14−0.3 (3)
C6—C7—C8—C90.6 (3)C20—C18—C19—C14179.80 (18)
C7—C8—C9—C100.9 (3)O2—C12—N1—N20.0 (2)
C8—C9—C10—O1178.61 (16)C11—C12—N1—N2178.53 (17)
C8—C9—C10—C1−2.5 (3)O2—C13—N2—N1−0.2 (2)
C2—C1—C10—C9−177.89 (17)C14—C13—N2—N1178.90 (16)
C6—C1—C10—C92.6 (2)C12—N1—N2—C130.1 (2)
C2—C1—C10—O11.1 (2)C9—C10—O1—C11−7.4 (2)
C6—C1—C10—O1−178.44 (14)C1—C10—O1—C11173.68 (14)
O1—C11—C12—N110.3 (3)C12—C11—O1—C10−168.05 (14)
O1—C11—C12—O2−171.25 (13)N1—C12—O2—C13−0.12 (19)
N2—C13—C14—C19172.65 (18)C11—C12—O2—C13−178.81 (14)
O2—C13—C14—C19−8.3 (2)N2—C13—O2—C120.17 (18)
N2—C13—C14—C15−7.5 (3)C14—C13—O2—C12−178.98 (14)
D—H···AD—HH···AD···AD—H···A
C9—H9···N2i0.932.603.447 (2)152
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C9H9N2i 0.932.603.447(2)152

Symmetry code: (i) .

  6 in total

1.  New oxadiazole derivatives showing partly antiplatelet, antithrombotic and serotonin antagonistic properties.

Authors:  Katrin Bethge; Heinz H Pertz; Klaus Rehse
Journal:  Arch Pharm (Weinheim)       Date:  2005-03       Impact factor: 3.751

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  1,3,4-oxadiazole: a biologically active scaffold.

Authors:  H Khalilullah; M J Ahsan; Md Hedaitullah; S Khan; B Ahmed
Journal:  Mini Rev Med Chem       Date:  2012-07       Impact factor: 3.862

Review 4.  Recent updates on biological activities of oxadiazoles.

Authors:  Rikta Saha; Omprakash Tanwar; Akranth Marella; M Mumtaz Alam; Mymoona Akhter
Journal:  Mini Rev Med Chem       Date:  2013-06       Impact factor: 3.862

Review 5.  1,3,4-oxadiazole derivatives as potential biological agents.

Authors:  Juan Sun; Jigar A Makawana; Hai-Liang Zhu
Journal:  Mini Rev Med Chem       Date:  2013-10       Impact factor: 3.862

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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