Literature DB >> 26028539

A Conserved Structural Chassis for Mounting Versatile CRISPR RNA-Guided Immune Responses.

Ryan N Jackson1, Blake Wiedenheft2.   

Abstract

Bacteria and archaea rely on CRISPR (clustered regularly interspaced short palindromic repeats) RNA-guided adaptive immune systems for targeted elimination of foreign nucleic acids. These immune systems have been divided into three main types, and the first atomic-resolution structure of a type III RNA-guided immune complex provides new insights into the mechanisms of nucleic acid degradation. Here we compare the crystal structure of a type III complex to recently determined structures of DNA-targeting type I CRISPR complexes. Structural comparisons support previous assertions that type I and type III systems share a common ancestor and reveal how a conserved structural chassis is used to support RNA-, DNA-, or both RNA- and DNA-targeting mechanisms.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26028539      PMCID: PMC4465340          DOI: 10.1016/j.molcel.2015.05.023

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  49 in total

1.  Structure of the Cmr2 subunit of the CRISPR-Cas RNA silencing complex.

Authors:  Alexis I Cocozaki; Nancy F Ramia; Yaming Shao; Caryn R Hale; Rebecca M Terns; Michael P Terns; Hong Li
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  Structure and RNA-binding properties of the type III-A CRISPR-associated protein Csm3.

Authors:  Ajla Hrle; Andreas A H Su; Judith Ebert; Christian Benda; Lennart Randau; Elena Conti
Journal:  RNA Biol       Date:  2013-09-30       Impact factor: 4.652

3.  Genetic characterization of antiplasmid immunity through a type III-A CRISPR-Cas system.

Authors:  Asma Hatoum-Aslan; Inbal Maniv; Poulami Samai; Luciano A Marraffini
Journal:  J Bacteriol       Date:  2013-11-01       Impact factor: 3.490

Review 4.  Cascade-mediated binding and bending of negatively supercoiled DNA.

Authors:  Edze R Westra; Benedikt Nilges; Paul B G van Erp; John van der Oost; Remus T Dame; Stan J J Brouns
Journal:  RNA Biol       Date:  2012-09-01       Impact factor: 4.652

Review 5.  To acquire or resist: the complex biological effects of CRISPR-Cas systems.

Authors:  Joseph Bondy-Denomy; Alan R Davidson
Journal:  Trends Microbiol       Date:  2014-02-26       Impact factor: 17.079

6.  Mechanism of foreign DNA selection in a bacterial adaptive immune system.

Authors:  Dipali G Sashital; Blake Wiedenheft; Jennifer A Doudna
Journal:  Mol Cell       Date:  2012-04-19       Impact factor: 17.970

7.  A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus.

Authors:  Ling Deng; Roger A Garrett; Shiraz A Shah; Xu Peng; Qunxin She
Journal:  Mol Microbiol       Date:  2013-02-03       Impact factor: 3.501

8.  Structures of the RNA-guided surveillance complex from a bacterial immune system.

Authors:  Blake Wiedenheft; Gabriel C Lander; Kaihong Zhou; Matthijs M Jore; Stan J J Brouns; John van der Oost; Jennifer A Doudna; Eva Nogales
Journal:  Nature       Date:  2011-09-21       Impact factor: 49.962

9.  Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease.

Authors:  Nancy F Ramia; Li Tang; Alexis I Cocozaki; Hong Li
Journal:  Nucleic Acids Res       Date:  2013-10-10       Impact factor: 16.971

Review 10.  Molecular mechanisms of CRISPR-mediated microbial immunity.

Authors:  Giedrius Gasiunas; Tomas Sinkunas; Virginijus Siksnys
Journal:  Cell Mol Life Sci       Date:  2014-02       Impact factor: 9.261

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  43 in total

1.  SnapShot: CRISPR-RNA-guided adaptive immune systems.

Authors:  Joshua Carter; Blake Wiedenheft
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

2.  A seed motif for target RNA capture enables efficient immune defence by a type III-B CRISPR-Cas system.

Authors:  Saifu Pan; Qi Li; Ling Deng; Suping Jiang; Xuexia Jin; Nan Peng; Yunxiang Liang; Qunxin She; Yingjun Li
Journal:  RNA Biol       Date:  2019-05-26       Impact factor: 4.652

3.  Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity.

Authors:  MaryClare F Rollins; Saikat Chowdhury; Joshua Carter; Sarah M Golden; Royce A Wilkinson; Joseph Bondy-Denomy; Gabriel C Lander; Blake Wiedenheft
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-24       Impact factor: 11.205

4.  Efficient RNA pseudouridylation by eukaryotic H/ACA ribonucleoproteins requires high affinity binding and correct positioning of guide RNA.

Authors:  Evan A Caton; Erin K Kelly; Rajashekhar Kamalampeta; Ute Kothe
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

5.  Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex.

Authors:  Saikat Chowdhury; Joshua Carter; MaryClare F Rollins; Sarah M Golden; Ryan N Jackson; Connor Hoffmann; Lyn'Al Nosaka; Joseph Bondy-Denomy; Karen L Maxwell; Alan R Davidson; Elizabeth R Fischer; Gabriel C Lander; Blake Wiedenheft
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

Review 6.  Evolutionary Ecology of Prokaryotic Immune Mechanisms.

Authors:  Stineke van Houte; Angus Buckling; Edze R Westra
Journal:  Microbiol Mol Biol Rev       Date:  2016-07-13       Impact factor: 11.056

7.  Target DNA recognition and cleavage by a reconstituted Type I-G CRISPR-Cas immune effector complex.

Authors:  Sonali Majumdar; Marianne Ligon; William Colby Skinner; Rebecca M Terns; Michael P Terns
Journal:  Extremophiles       Date:  2016-08-31       Impact factor: 2.395

Review 8.  Chemistry of Class 1 CRISPR-Cas effectors: Binding, editing, and regulation.

Authors:  Tina Y Liu; Jennifer A Doudna
Journal:  J Biol Chem       Date:  2020-08-14       Impact factor: 5.157

9.  The Impact of DNA Topology and Guide Length on Target Selection by a Cytosine-Specific Cas9.

Authors:  Tsz Kin Martin Tsui; Travis H Hand; Emily C Duboy; Hong Li
Journal:  ACS Synth Biol       Date:  2017-03-20       Impact factor: 5.110

10.  Recruitment of CRISPR-Cas systems by Tn7-like transposons.

Authors:  Joseph E Peters; Kira S Makarova; Sergey Shmakov; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-15       Impact factor: 11.205

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