Literature DB >> 26022748

Automated methods for hippocampus segmentation: the evolution and a review of the state of the art.

Vanderson Dill1, Alexandre Rosa Franco, Márcio Sarroglia Pinho.   

Abstract

The segmentation of the hippocampus in Magnetic Resonance Imaging (MRI) has been an important procedure to diagnose and monitor several clinical situations. The precise delineation of the borders of this brain structure makes it possible to obtain a measure of the volume and estimate its shape, which can be used to diagnose some diseases, such as Alzheimer's disease, schizophrenia and epilepsy. As the manual segmentation procedure in three-dimensional images is highly time consuming and the reproducibility is low, automated methods introduce substantial gains. On the other hand, the implementation of those methods is a challenge because of the low contrast of this structure in relation to the neighboring areas of the brain. Within this context, this research presents a review of the evolution of automatized methods for the segmentation of the hippocampus in MRI. Many proposed methods for segmentation of the hippocampus have been published in leading journals in the medical image processing area. This paper describes these methods presenting the techniques used and quantitatively comparing the methods based on Dice Similarity Coefficient. Finally, we present an evaluation of those methods considering the degree of user intervention, computational cost, segmentation accuracy and feasibility of application in a clinical routine.

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Year:  2015        PMID: 26022748     DOI: 10.1007/s12021-014-9243-4

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  83 in total

1.  Automated hippocampal segmentation by regional fluid registration of serial MRI: validation and application in Alzheimer's disease.

Authors:  W R Crum; R I Scahill; N C Fox
Journal:  Neuroimage       Date:  2001-05       Impact factor: 6.556

2.  Magnetic resonance imaging deformation-based segmentation of the hippocampus in patients with mesial temporal sclerosis and temporal lobe epilepsy.

Authors:  R E Hogan; K E Mark; I Choudhuri; L Wang; S Joshi; M I Miller; R D Bucholz
Journal:  J Digit Imaging       Date:  2000-05       Impact factor: 4.056

3.  Improved optimization for the robust and accurate linear registration and motion correction of brain images.

Authors:  Mark Jenkinson; Peter Bannister; Michael Brady; Stephen Smith
Journal:  Neuroimage       Date:  2002-10       Impact factor: 6.556

4.  Specific hippocampal volume reductions in individuals at risk for Alzheimer's disease.

Authors:  A Convit; M J De Leon; C Tarshish; S De Santi; W Tsui; H Rusinek; A George
Journal:  Neurobiol Aging       Date:  1997 Mar-Apr       Impact factor: 4.673

5.  Prior knowledge driven multiscale segmentation of brain MRI.

Authors:  Ayelet Akselrod-Ballin; Meirav Galun; John Moshe Gomori; Achi Brandt; Ronen Basri
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

6.  A 3D deformable surface model for segmentation of objects from volumetric data in medical images.

Authors:  A Ghanei; H Soltanian-Zadeh; J P Windham
Journal:  Comput Biol Med       Date:  1998-05       Impact factor: 4.589

7.  Measurement of hippocampal subfields and age-related changes with high resolution MRI at 4T.

Authors:  S G Mueller; L Stables; A T Du; N Schuff; D Truran; N Cashdollar; M W Weiner
Journal:  Neurobiol Aging       Date:  2006-05-19       Impact factor: 4.673

8.  Fast and robust multi-atlas segmentation of brain magnetic resonance images.

Authors:  Jyrki Mp Lötjönen; Robin Wolz; Juha R Koikkalainen; Lennart Thurfjell; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-10-24       Impact factor: 6.556

9.  Automatic hippocampus segmentation of 7.0 Tesla MR images by combining multiple atlases and auto-context models.

Authors:  Minjeong Kim; Guorong Wu; Wei Li; Li Wang; Young-Don Son; Zang-Hee Cho; Dinggang Shen
Journal:  Neuroimage       Date:  2013-06-11       Impact factor: 6.556

10.  Segmentation of MR images via discriminative dictionary learning and sparse coding: application to hippocampus labeling.

Authors:  Tong Tong; Robin Wolz; Pierrick Coupé; Joseph V Hajnal; Daniel Rueckert
Journal:  Neuroimage       Date:  2013-03-21       Impact factor: 6.556

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  28 in total

1.  Fully automatic multi-atlas segmentation of CTA for partial volume correction in cardiac SPECT/CT.

Authors:  Qingyi Liu; Hassan Mohy-Ud-Din; Nabil E Boutagy; Mingyan Jiang; Silin Ren; John C Stendahl; Albert J Sinusas; Chi Liu
Journal:  Phys Med Biol       Date:  2017-03-07       Impact factor: 3.609

2.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

3.  Concatenated Spatially-localized Random Forests for Hippocampus Labeling in Adult and Infant MR Brain Images.

Authors:  Lichi Zhang; Qian Wang; Yaozong Gao; Guorong Wu; Dinggang Shen
Journal:  Neurocomputing       Date:  2016-06-07       Impact factor: 5.719

4.  Inter-observer variation of hippocampus delineation in hippocampal avoidance prophylactic cranial irradiation.

Authors:  F Bartel; M van Herk; H Vrenken; F Vandaele; S Sunaert; K de Jaeger; N J Dollekamp; C Carbaat; E Lamers; E M T Dieleman; Y Lievens; D de Ruysscher; S B Schagen; M B de Ruiter; J C de Munck; J Belderbos
Journal:  Clin Transl Oncol       Date:  2018-06-06       Impact factor: 3.405

Review 5.  The many dimensions of human hippocampal organization and (dys)function.

Authors:  Sarah Genon; Boris C Bernhardt; Renaud La Joie; Katrin Amunts; Simon B Eickhoff
Journal:  Trends Neurosci       Date:  2021-10-27       Impact factor: 13.837

6.  Hippocampal volume predicts antidepressant efficacy in depressed patients without incomplete hippocampal inversion.

Authors:  Romain Colle; Claire Cury; Marie Chupin; Eric Deflesselle; Patrick Hardy; Ghaidaa Nasser; Bruno Falissard; Denis Ducreux; Olivier Colliot; Emmanuelle Corruble
Journal:  Neuroimage Clin       Date:  2016-04-27       Impact factor: 4.881

Review 7.  Hippocampal subfields at ultra high field MRI: An overview of segmentation and measurement methods.

Authors:  Alessia Giuliano; Graziella Donatelli; Mirco Cosottini; Michela Tosetti; Alessandra Retico; Maria Evelina Fantacci
Journal:  Hippocampus       Date:  2017-02-23       Impact factor: 3.899

8.  Regional analysis of volumes and reproducibilities of automatic and manual hippocampal segmentations.

Authors:  Fabian Bartel; Hugo Vrenken; Fetsje Bijma; Frederik Barkhof; Marcel van Herk; Jan C de Munck
Journal:  PLoS One       Date:  2017-02-09       Impact factor: 3.240

9.  Stability of hippocampal subfield volumes after trauma and relationship to development of PTSD symptoms.

Authors:  C N Weis; E K Webb; A A Huggins; M Kallenbach; T A Miskovich; J M Fitzgerald; K P Bennett; J L Krukowski; T A deRoon-Cassini; C L Larson
Journal:  Neuroimage       Date:  2021-04-18       Impact factor: 6.556

10.  Norms for Automatic Estimation of Hippocampal Atrophy and a Step Forward for Applicability to the Italian Population.

Authors:  Silvia De Francesco; Samantha Galluzzi; Nicola Vanacore; Cristina Festari; Paolo Maria Rossini; Stefano F Cappa; Giovanni B Frisoni; Alberto Redolfi
Journal:  Front Neurosci       Date:  2021-06-28       Impact factor: 4.677

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