Literature DB >> 26021329

Synthesising gene clock with toggle switch and oscillator.

Chun-Liang Lin1, Po-Kuei Chen2, Young-Yi Cheng2.   

Abstract

The usefulness of a genetic clock lies in its role to stimulate a sequence of logic reactions for sequential biological circuits. A clock signal is a periodic square wave, its amplitude alternates at a steady frequency between fixed minimal and maximal levels. Transition between the minimum and the maximum is instantaneous for an ideal square wave; however, the function is unrealisable in physical bio-systems. This research develops a new genetic clock generator based on a genetic oscillator, in which, a sine wave generator is adopted as a signal oscillator. It is shown that combination of a genetic oscillator with a toggle switch is able to generate clock signals forming an efficient way to generate a near square wave. In silico study confirms the proposed idea.

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Year:  2015        PMID: 26021329      PMCID: PMC8687201          DOI: 10.1049/iet-syb.2014.0022

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  11 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

Review 3.  Transcriptional regulation by the numbers: applications.

Authors:  Lacramioara Bintu; Nicolas E Buchler; Hernan G Garcia; Ulrich Gerland; Terence Hwa; Jané Kondev; Thomas Kuhlman; Rob Phillips
Journal:  Curr Opin Genet Dev       Date:  2005-04       Impact factor: 5.578

Review 4.  Transcriptional regulation by the numbers: models.

Authors:  Lacramioara Bintu; Nicolas E Buchler; Hernan G Garcia; Ulrich Gerland; Terence Hwa; Jané Kondev; Rob Phillips
Journal:  Curr Opin Genet Dev       Date:  2005-04       Impact factor: 5.578

5.  The role of dynamic stimulation pattern in the analysis of bistable intracellular networks.

Authors:  Thomas Millat; Sree N Sreenath; Radina P Soebiyanto; Jayant Avva; Kwang-Hyun Cho; Olaf Wolkenhauer
Journal:  Biosystems       Date:  2008-04-04       Impact factor: 1.973

6.  Coupling oscillations and switches in genetic networks.

Authors:  Didier Gonze
Journal:  Biosystems       Date:  2009-09-06       Impact factor: 1.973

7.  Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements.

Authors:  R Lutz; H Bujard
Journal:  Nucleic Acids Res       Date:  1997-03-15       Impact factor: 16.971

8.  Synthesising periodic triggering signals with genetic oscillators.

Authors:  Chun-Liang Lin; Po-Kuei Chen
Journal:  IET Syst Biol       Date:  2014-02       Impact factor: 1.615

9.  Design of synthetic genetic oscillators using evolutionary optimization.

Authors:  Yen-Chang Chang; Chun-Liang Lin; Tanagorn Jennawasin
Journal:  Evol Bioinform Online       Date:  2013-03-10       Impact factor: 1.625

10.  A bistable gene switch for antibiotic biosynthesis: the butyrolactone regulon in Streptomyces coelicolor.

Authors:  Sarika Mehra; Salim Charaniya; Eriko Takano; Wei-Shou Hu
Journal:  PLoS One       Date:  2008-07-16       Impact factor: 3.240

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  2 in total

1.  Delay decomposition approach to [Formula: see text] filtering analysis of genetic oscillator networks with time-varying delays.

Authors:  V M Revathi; P Balasubramaniam
Journal:  Cogn Neurodyn       Date:  2016-01-08       Impact factor: 5.082

2.  Synthesis of control unit for future biocomputer.

Authors:  Chun-Liang Lin; Ting-Yu Kuo; Wei-Xian Li
Journal:  J Biol Eng       Date:  2018-08-14       Impact factor: 4.355

  2 in total

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