| Literature DB >> 26019484 |
Peter Bodor1, Antal Szoke2, Kitti Toth-Lencses2, Aniko Veres2, Tamas Deak1, Pal Kozma3, Gyorgy Denes Bisztray1, Erzsebet Kiss2.
Abstract
Twenty-seven grapevine (Vitis vinifera L.) varieties within 12 putative berry colour variation groups (conculta) were genotyped with 14 highly polymorphic microsatellite (simple sequence repeats (SSR)) markers. Three additional oligonucleotide primers were applied for the detection of the Gret1 retroelement insertion in the promoter region of VvMybA1 transcription factor gene regulating the UFGT (UDP-glucose: flavonoid 3-O-glucosyltransferase) activity. UFGT is the key enzyme of the anthocyanin biosynthetic pathway. SSR results proved that the analysed cultivars can be grouped only into nine concultas, the other three putative berry colour variant groups consist of homonyms as a consequence of misnaming. In the case of Sárfehér-Sárpiros, Delaware red-Delaware white and Járdovány fekete-Járdovány fehér, it was attested that they are not bud sports, but homonyms. Some conculta members could be differentiated according to the presence or the absence of the Gret1 retroelement (Chasselas, Furmint and Lisztes), while others, Bajor, Bakator, Gohér and Traminer conculta members, remained indistinguishable either by the microsatellites or the Gret1-based method.Entities:
Keywords: Gret1 retroelement; SSR; VvMybA1; conculta
Year: 2014 PMID: 26019484 PMCID: PMC4434103 DOI: 10.1080/13102818.2014.901666
Source DB: PubMed Journal: Biotechnol Biotechnol Equip ISSN: 1310-2818 Impact factor: 1.632
The analysed cultivars with the site of collection, geographical origin according to Németh,[4] berry colour, the possibility of discrimination by SSR method or by the Gret1 insertion into the VvMybA1 locus.
| Possibility of discrimination with | |||||
|---|---|---|---|---|---|
| Accession name | Collection site | Geographical origin | Berry colour | SSR | |
| Bajor feketefájú | Pécs | Black | No | no | |
| Bajor kék | Pécs | Black | No | yes | |
| Bajor szürke | Pécs | Grey | No | no | |
| Bakator piros | Pécs | Red | No | No | |
| Bakator tüdőszínű | Pécs | Pink | No | No | |
| Chasselas blanc | Nagyréde | White | No | Yes | |
| Chasselas rouge | Nagyréde | Red | No | Yes | |
| Delaware red | Eger | Red | Yes | Yes | |
| Delaware white | Eger | White | Yes | Yes | |
| Furmint fehér | Pécs | White | No | Yes | |
| Furmint piros | Pécs | Red | No | Yes | |
| Gohér fehér | Pécs | White | No | No | |
| Gohér piros | Pécs | Red | No | No | |
| Gohér változó | Pécs | White | No | No | |
| Járdovány fehér | Helvécia | White | Yes | Yes | |
| Járdovány fekete | Helvécia | Black | Yes | Yes | |
| Lisztes fehér | Pécs | White | No | Yes | |
| Lisztes piros | Pécs | Red | No | Yes | |
| Merlot | Pécs | Black | No | No | |
| Merlot gris | Pécs | Grey | No | No | |
| Pinot blanc | Nagyréde | White | No | Yes | |
| Pinot gris | Nagyréde | Grey | No | No | |
| Pinot noir | Nagyréde | Black | No | No | |
| Sárfehér | Helvécia | White | Yes | Yes | |
| Sárpiros | Helvécia | Red | Yes | Yes | |
| Traminer | Eger | White | No | No | |
| Traminer red | Eger | Red | No | No | |
Note: The Hungarian names indicate the berry colour of the cultivars: fehér = white; piros = red; változó = altering; szürke = grey; fekete = black, tüdőszínű = pink.
SSR allele sizes of the 27 cultivars at 14 loci.
| Accession name | Berry colour | Scu10 | VVS2 | VVMD5 | VVMD7 | VVMD21 | VVMD25 | VVMD27 | VVMD28 | VVMD31 | VVMD36 | VrZAG62 | VrZAG79 | VrZAG83 | VrZAG112 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bajor feketefájú | Black | 202:208 | 134:154 | 228:238 | 243:243 | 248:256 | 242:244 | 182:196 | 238:250 | 209:209 | 254:254 | 192:200 | 252:262 | 193:193 | 243:243 |
| Bajor kék | Black | 202:208 | 134:154 | 228:238 | 243:243 | 248:256 | 242:244 | 182:196 | 238:250 | 209:209 | 254:254 | 192:200 | 252:262 | 193:193 | 243:243 |
| Bajor szürke | Grey | 202:208 | 134:154 | 228:238 | 243:243 | 248:256 | 242:244 | 182:196 | 238:250 | 209:209 | 254:254 | 192:200 | 252:262 | 193:193 | 243:243 |
| Bakator piros | Red | 202:208 | 134:134 | 228:242 | 243:257 | 242:256 | 244:244 | 180:186 | 236:250 | 201:209 | 266:288 | 192:198 | 254:254 | 191:197 | 237:241 |
| Bakator tüdőszínű | Pink | 202:208 | 134:134 | 228:242 | 243:257 | 242:256 | 244:244 | 180:186 | 236:250 | 201:209 | 266:288 | 192.198 | 254:254 | 191:197 | 237:241 |
| Chasselas blanc | White | 204:214 | 134:144 | 228:236 | 242.250 | 248:266 | 244:260 | 186:190 | 220:270 | 209:213 | 264:264 | 196:206 | 252:260 | 193:203 | 243:243 |
| Chasselas rouge | Red | 204:214 | 134:144 | 228:236 | 242.250 | 248:266 | 244:260 | 186:190 | 220:270 | 209:213 | 264:264 | 196:206 | 252:260 | 193:203 | 243:243 |
| Delaware fehér | White | 202:204 | 134:134 | 228:228 | 239:243 | 242:266 | 244:244 | 186:190 | 234:248 | 203:209 | 258:264 | 198:208 | 252:258 | 191:203 | 243:243 |
| Delaware piros | Red | 204:210 | 146:150 | 236:236 | 231:231 | 220:220 | 244:250 | 204:210 | 218:254 | 199:201 | 240:250 | 202:212 | 252:260 | 159:167 | 231:243 |
| Furmint fehér | White | 202:208 | 134:154 | 228:242 | 243:253 | 248:258 | 242:244 | 180:196 | 230:250 | 209:209 | 254:276 | 192:208 | 238:250 | 191:191 | 243:243 |
| Furmint piros | Red | 202:208 | 134:154 | 228:242 | 243:253 | 248:258 | 242:244 | 180:196 | 230:250 | 209:209 | 254:276 | 192:208 | 238:250 | 191:191 | 243:243 |
| Gohér fehér | White | 202:208 | 134:154 | 240:240 | 243:253 | 242:256 | 242:244 | 182:196 | 236:250 | 207:211 | 254:288 | 190:208 | 252:262 | 193:193 | 241:241 |
| Gohér piros | Red | 202:208 | 134:154 | 240:240 | 243:253 | 242:256 | 242:244 | 182:196 | 236:250 | 207:211 | 254:288 | 190:208 | 252.262 | 193:193 | 241:241 |
| Gohér változó | White | 202:208 | 134:154 | 240:240 | 243:253 | 242:256 | 242:244 | 182:196 | 236:250 | 207:211 | 254:288 | 190:208 | 252:262 | 193:193 | 241:241 |
| Járdovány fehér | White | 208:214 | 142:144 | 228:236 | 243:253 | 242:248 | 242:244 | 180:196 | 230:262 | 209:209 | 266:276 | 200:208 | 250:250 | 197:197 | 245:245 |
| Járdovány fekete | Black | 202:208 | 134:154 | 222:232 | 243:253 | 248:258 | 242:244 | 180:196 | 230:250 | 209:209 | 254:276 | 200:208 | 250:250 | 191:191 | 237:245 |
| Lisztes fehér | White | 208:208 | 134:144 | 228:234 | 251:251 | 248:256 | 242:244 | 182:182 | 236:250 | 207:211 | 276:288 | 208:208 | 238:260 | 193:197 | 241:241 |
| Lisztes piros | Red | 208:208 | 134:144 | 228:234 | 251:251 | 248:256 | 242:244 | 182:182 | 236:250 | 207:211 | 276:288 | 208:208 | 238:260 | 193:197 | 241:241 |
| Merlot | Black | 202:216 | 140:152 | 228:238 | 243:251 | 242:248 | 242:254 | 190:192 | 230:236 | 209:213 | 254:254 | 198:198 | 260:260 | 197:203 | 231:245 |
| Merlot gris | Grey | 202:216 | 140:152 | 228:238 | 243:251 | 242:248 | 242:254 | 190:192 | 230:236 | 209:213 | 254:254 | 198:198 | 260:260 | 197:203 | 231:245 |
| Pinot blanc | White | 204:216 | 138:152 | 230:240 | 243:247 | 248:248 | 242:252 | 186:190 | 220:236 | 213:213 | 254:254 | 192:198 | 242:248 | 191:203 | 243:243 |
| Pinot gris | Grey | 204:216 | 138:152 | 230:240 | 243:247 | 248:248 | 242:252 | 186:190 | 220:236 | 213:213 | 254:254 | 192:198 | 242:248 | 191:203 | 243:243 |
| Pinot noir | Black | 204:216 | 138:152 | 230:240 | 243:247 | 248:248 | 242:252 | 186:190 | 220:236 | 213:213 | 254:254 | 192:198 | 242:248 | 191:203 | 243:243 |
| Sárfehér | White | 202:208 | 134:152 | 226:238 | 251:259 | 242:248 | 244:258 | 182:196 | 250:280 | 207:207 | 264:264 | 208:208 | 250:250 | 191:193 | 245:245 |
| Sárpiros | Red | 202:208 | 134:134 | 226:240 | 251:257 | 242:242 | 242:258 | 180:196 | 270:280 | 207:209 | 264:288 | 190.208 | 250:258 | 193:193 | 237:245 |
| Traminer | White | 204:208 | 152:152 | 234:240 | 247:261 | 248:248 | 254:254 | 190:190 | 236:236 | 201:213 | 254:264 | 192:198 | 248:254 | 191:203 | 237:243 |
| Traminer red | Red | 204:208 | 152:152 | 234:240 | 247:261 | 248:248 | 254:254 | 190:190 | 236:236 | 201:213 | 254:264 | 192:198 | 248:254 | 191:203 | 237:243 |
Figure 1. Detection of VvMybA1a allele (containing Gret1 retrotransposon). M: DNA molecular weight marker (Fermentas GeneRuler 100 bp Ladder Plus / 3000 bp, 2000 bp, 1500 bp, 1200 bp, 1031 bp, 900 bp, 800 bp, 700 bp, 600 bp, 500 bp, 400 bp, 300 bp, 200 bp, 100 bp); Lane 1: Lisztes piros; Lane 2: Lisztes fehér; Lane 3: Bakator piros; Lane 4: Bakator tüdőszínű; Lane 5: Gohér piros; Lane 6: Gohér fehér; Lane 7: Gohér változó; Lane 8: Furmint piros; Lane 9: Furmint fehér; Lane 10: Bajor kék; Lane 11: Bajor feketefájú; Lane 12: Bajor szürke; Lane 13: Sárpiros; Lane 14: Sárfehér; Lane 15: Járdovány fekete; Lane 16: Járdovány fehér; Lane 17: Chasselas rouge; Lane 18: Chasselas blanc; Lane 19: Pinot noir; Lane 20: Pinot gris; Lane 21: Pinot blanc; Lane 22: Traminer red; Lane 23: Traminer; Lane 24: Merlot; Lane 25: Merlot gris; Lane 26: Delaware red; Lane 27: Delaware white.
Figure 2. Detection of VvMybA1b and VvMybA1c alleles. M: DNA molecular weight marker (Fermentas GeneRuler 100 bp Ladder Plus / 3000 bp, 2000 bp, 1500 bp, 1200 bp, 1031 bp, 900 bp, 800 bp, 700 bp, 600 bp, 500 bp, 400 bp, 300 bp, 200 bp, 100 bp); Lane 1: Lisztes piros; Lane 2: Lisztes fehér; Lane 3: Bakator piros; Lane 4: Bakator tüdőszínű; Lane 5: Gohér piros; Lane 6: Gohér fehér; Lane 7: Gohér változó; Lane 8: Furmint piros; Lane 9: Furmint fehér; Lane 10: Bajor kék; Lane 11: Bajor feketefájú; Lane 12: Bajor szürke; Lane 13: Sárpiros; Lane 14: Sárfehér; Lane 15: Járdovány fekete; Lane 16: Járdovány fehér; Lane 17: Chasselas rouge; Lane 18: Chasselas blanc; Lane 19: Pinot noir; Lane 20: Pinot gris; Lane 21: Pinot blanc; Lane 22: Traminer red; Lane 23: Traminer; Lane 24: Merlot; Lane 25: Merlot gris; Lane 26: Delaware red; Lane 27: Delaware white.