Literature DB >> 26019448

Expression profile of microRNAs in gastrointestinal stromal tumors revealed by high throughput quantitative RT-PCR microarray.

Han-Xing Tong1, Yu-Hong Zhou1, Ying-Yong Hou1, Yong Zhang1, Yuan Huang1, Bin Xie1, Jiong-Yuan Wang1, Quan Jiang1, Jun-Yi He1, Ye-Bo Shao1, Wu-Mei Han1, Ruo-Ying Tan1, Jun Zhu1, Wei-Qi Lu1.   

Abstract

AIM: To investigate the microRNA (miRNA) expression profile in gastrointestinal stromal tumor (GIST) tissues that could serve as a novel diagnostic biomarker for GIST detection.
METHODS: We performed a quantitative real-time quantitative reverse transcriptase polymerase chain reaction assay to analyze the expression of 1888 miRNAs in a sample set that included 54 GIST tissue samples.
RESULTS: We found that dysregulation of several miRNAs may be related to the malignant potential of GISTs. Six of these miRNAs, hsa-let-7c, miR-218, miR-488#, miR-4683, miR-34c-5p and miR-4773, were selected as the final list of biomarkers to separate the malignant GISTs (M group) from the benign GISTs (B group). In addition, MiR-29b-2#, hsa-let-7c, miR-891b, miR-218, miR-204, miR-204-3p, miR-628-5p, miR-744, miR-29c#, miR-625 and miR-196a were used to distinguish between the borderline (BO group) and M groups. There were 11 common miRNAs selected to separate the benign and borderline (BB) group from the M group, including hsa-let-7c, miR-218, miR-628-5p, miR-204-3p, miR-204, miR-891b, miR-488#, miR-145, miR-891a, miR-34c-5p and miR-196a.
CONCLUSION: The identified miRNAs appear to be novel biomarkers to distinguish malignant from benign GISTs, which may be helpful to understand the mechanisms of GIST oncogenesis and progression, and to further elucidate the characteristics of GIST subtypes.

Entities:  

Keywords:  Diagnosis; Gastrointestinal stromal tumors; MicroRNAs; Microarray analysis; Real-time polymerase chain reaction

Mesh:

Substances:

Year:  2015        PMID: 26019448      PMCID: PMC4438018          DOI: 10.3748/wjg.v21.i19.5843

Source DB:  PubMed          Journal:  World J Gastroenterol        ISSN: 1007-9327            Impact factor:   5.742


  36 in total

1.  Clinical and pathological studies of borderline gastrointestinal stromal tumors.

Authors:  Yuan Shi; Ying-yong Hou; Shao-hua Lu; Yang Zhou; Jian-fang Xu; Yuan Ji; Jun Hou; Chen Xu; Ya-lan Liu; Yun-shan Tan; Xiong-zeng Zhu
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2.  V600E BRAF mutations are alternative early molecular events in a subset of KIT/PDGFRA wild-type gastrointestinal stromal tumours.

Authors:  A Agaimy; L M Terracciano; S Dirnhofer; L Tornillo; A Foerster; A Hartmann; M P Bihl
Journal:  J Clin Pathol       Date:  2009-07       Impact factor: 3.411

3.  MicroRNA-494 downregulates KIT and inhibits gastrointestinal stromal tumor cell proliferation.

Authors:  Won Kyu Kim; Misun Park; Young-Kook Kim; You Kwon Tae; Han-Kwang Yang; Jae Myun Lee; Hoguen Kim
Journal:  Clin Cancer Res       Date:  2011-10-31       Impact factor: 12.531

4.  The tumor suppressive microRNA miR-218 targets the mTOR component Rictor and inhibits AKT phosphorylation in oral cancer.

Authors:  Atsushi Uesugi; Ken-Ichi Kozaki; Tomohiko Tsuruta; Mayuko Furuta; Kei-Ichi Morita; Issei Imoto; Ken Omura; Johji Inazawa
Journal:  Cancer Res       Date:  2011-07-27       Impact factor: 12.701

5.  miR-218 inhibits the invasive ability of glioma cells by direct downregulation of IKK-β.

Authors:  Libing Song; Quan Huang; Kun Chen; Liping Liu; Chuyong Lin; Ting Dai; Chunping Yu; Zhiqiang Wu; Jun Li
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6.  MicroRNA-34 suppresses breast cancer invasion and metastasis by directly targeting Fra-1.

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7.  Development and validation of a prognostic nomogram for recurrence-free survival after complete surgical resection of localised primary gastrointestinal stromal tumour: a retrospective analysis.

Authors:  Jason S Gold; Mithat Gönen; Antonio Gutiérrez; Javier Martín Broto; Xavier García-del-Muro; Thomas C Smyrk; Robert G Maki; Samuel Singer; Murray F Brennan; Cristina R Antonescu; John H Donohue; Ronald P DeMatteo
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Review 8.  MicroRNA-196: critical roles and clinical applications in development and cancer.

Authors:  Changyi Chen; Yuqing Zhang; Lidong Zhang; Sarah M Weakley; Qizhi Yao
Journal:  J Cell Mol Med       Date:  2011-01       Impact factor: 5.310

9.  The tumour suppressor miR-34c targets MET in prostate cancer cells.

Authors:  Z Hagman; B S Haflidadottir; M Ansari; M Persson; A Bjartell; A Edsjö; Y Ceder
Journal:  Br J Cancer       Date:  2013-08-06       Impact factor: 7.640

10.  MiR-17-92 and miR-221/222 cluster members target KIT and ETV1 in human gastrointestinal stromal tumours.

Authors:  C M M Gits; P F van Kuijk; M B E Jonkers; A W M Boersma; W F van Ijcken; A Wozniak; R Sciot; P Rutkowski; P Schöffski; T Taguchi; R H J Mathijssen; J Verweij; S Sleijfer; M Debiec-Rychter; E A C Wiemer
Journal:  Br J Cancer       Date:  2013-08-22       Impact factor: 7.640

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1.  MiR-204 down-regulation elicited perturbation of a gene target signature common to human cholangiocarcinoma and gastric cancer.

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Journal:  Oncotarget       Date:  2017-05-02

2.  miR-488 acts as a tumor suppressor gene in gastric cancer.

Authors:  Yan Zhao; Guifang Lu; Xiquan Ke; Xinlan Lu; Xin Wang; Hongxia Li; Mudan Ren; Shuixiang He
Journal:  Tumour Biol       Date:  2016-01-06

3.  Gene expression profile of human esophageal squamous carcinoma cell line TE-1.

Authors:  Hong-Xing Cai; Zheng-Qiu Zhu; Xiao-Ming Sun; Zhou-Ru Li; Yan-Bo Chen; Guo-Kai Dong
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4.  MiRNA profiling of gastrointestinal stromal tumors by next-generation sequencing.

Authors:  Ugne Gyvyte; Simonas Juzenas; Violeta Salteniene; Juozas Kupcinskas; Lina Poskiene; Laimutis Kucinskas; Sonata Jarmalaite; Kristina Stuopelyte; Ruta Steponaitiene; Georg Hemmrich-Stanisak; Matthias Hübenthal; Alexander Link; Sabine Franke; Andre Franke; Dalia Pangonyte; Vaiva Lesauskaite; Limas Kupcinskas; Jurgita Skieceviciene
Journal:  Oncotarget       Date:  2017-06-06

5.  Screening for Differentially Expressed Genes of Gastric Stromal Tumor Originating from Muscularis Propria.

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Journal:  Chin Med J (Engl)       Date:  2017-03-20       Impact factor: 2.628

6.  Diagnostic and prognostic value of microRNA-628 for cancers.

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7.  MiR-204-3p Inhibited the Proliferation of Bladder Cancer Cells via Modulating Lactate Dehydrogenase-Mediated Glycolysis.

Authors:  Jinan Guo; Pan Zhao; Zengqin Liu; Zaishang Li; Yeqing Yuan; Xueqi Zhang; Zhou Yu; Jiequn Fang; Kefeng Xiao
Journal:  Front Oncol       Date:  2019-11-29       Impact factor: 6.244

Review 8.  Small Molecules in Rare Tumors: Emerging Role of MicroRNAs in GIST.

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Journal:  Int J Mol Sci       Date:  2018-01-30       Impact factor: 5.923

Review 9.  Non-Coding RNAs, a Novel Paradigm for the Management of Gastrointestinal Stromal Tumors.

Authors:  Azadeh Amirnasr; Stefan Sleijfer; Erik A C Wiemer
Journal:  Int J Mol Sci       Date:  2020-09-22       Impact factor: 5.923

10.  Mir-488 alleviates chemoresistance and glycolysis of colorectal cancer by targeting PFKFB3.

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  10 in total

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