| Literature DB >> 26015771 |
Jianmin Hu1, Shengping Hou2, Xueping Zhu1, Jing Fang2, Yan Zhou2, Yunjia Liu2, Lin Bai2, Aize Kijlstra3, Peizeng Yang2.
Abstract
PURPOSE: This study aimed to investigate the association of interleukin (IL)-10 gene polymorphisms with Behcet's disease (BD) and Vogt-Koyanagi-Harada (VKH) syndrome in the Chinese Han population.Entities:
Mesh:
Substances:
Year: 2015 PMID: 26015771 PMCID: PMC4443582
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Summary characteristic of Behcet’s patients and normal control subjects in this study.
| StageI | 300 | 33.52±8.73 | 257/43 | 350 | 36.57±10.89 | 217/133 |
| Stage II | 418 | 33.66±8.83 | 362/56 | 1403 | 40.44±11.14 | 789/614 |
| Combined | 718 | 33.60±8.78 | 619/99 | 1753 | 39.66±11.19 | 1006/747 |
SD, standard deviation
The number and ratio of Behcet’s patients with clinical features.
| | ||
|---|---|---|
| Female | 99 | 13.8 |
| Male | 619 | 86.2 |
| Age at onset (years [SD]) | 33.60 (8.78) | |
| Uveitis | 718 | 100 |
| Genital ulcers | 413 | 57.5 |
| Skin lesions | 538 | 74.9 |
| Hypopyon | 188 | 26.2 |
| Arthritis | 99 | 15.2 |
| Prick tests | 164 | 22.8 |
SD, standard deviation
The details of primers of IL10 SNPs, restriction enzymes used for RFLP analysis and assay information from Applied Biosystems for TaqMan SNP assays analysis.
| Primers/Restriction enzyme | 5′ TGTACCCTTGTACAGGTGATGTGA 3′ | EcoRV | |
| | | 5′ ACCCCGATTTCATTAGGATTCT 3′ | |
| Primers/Restriction enzyme | 5′ GAGAATCCTAATGAAATCGGG 3′ | Csp6I | |
| | | 5′ TTGCTAACTTAGGCAGTCACC 3′ | |
| Primers/Restriction enzyme | 5′ CAAGACAACACTACTAAGGCTCC 3′ | BslI | |
| | | 5′ CAGCACATAGAATGAAACCTTG 3′ | |
| Primers/Restriction enzyme | 5′CGGCCAGATTTTTTAAATAACTTGCCTCTG3′ | BglI | |
| | | 5′ TGAAATGCGGTCTTTTTGATGCCCT 3′ | |
| Primers/Restriction enzyme | 5′ TGCTTAGAGCGTTTCCAGACC 3′ | TasI | |
| | | 5′ TTTCTGCGGAGCTACATTCG 3′ | |
| ABI assay ID | C___8828812_10 | | |
| | SNP type | Transition, Substitution, Intron, Intragenic | |
| | Assay Type | Validated | |
| Chr site | Chr.1: 206,944,233 | ||
Genotype and allele frequencies of IL10 polymorphisms in BD patients and controls.
| | |||||||
|---|---|---|---|---|---|---|---|
| StageI | C C | 6(0.020) | 44(0.126) | 4.60×10−7 | 8.28×10−6 | 0.142(0.060–0.338) | |
| C T | 126(0.420) | 160(0.457) | 0.342 | NS | 0.860(0.630–1.174) | ||
| T T | 168(0.560) | 146(0.417) | 2.80×10−4 | 5.03×10−3 | 1.778(1.302–2.429) | ||
| C | 138(0.230) | 248(0.354) | 1.01×10−6 | 1.82×10−5 | 0.544(0.426–0.696) | ||
| T | 462(0.770) | 452(0.646) | 1.01×10−6 | 1.82×10−5 | 1.837(1.437–2.347) | ||
| StageII | C C | 27(0.065) | 166(0.118) | 0.002 | 0.03 | 0.515(0.337–0.785) | |
| C T | 175(0.419) | 679(0.484) | 0.019 | NS | 0.768(0.616–0.958) | ||
| T T | 216(0.517) | 558(0.398) | 1.55×10−5 | 2.33×10−4 | 1.619(1.300–2.017) | ||
| C | 229(0.274) | 1011(0.360) | 3.73×10−6 | 5.59×10−5 | 0.670(0.565–0.794) | ||
| T | 607(0.726) | 1795(0.640) | 3.73×10−6 | 5.59×10−5 | 1.493(1.259–1.770) | ||
| Combined | C C | 33(0.046) | 210(0.120) | 2.19×10−8 | 3.95×10−7 | 0.354(0.243–0.517) | |
| C T | 301(0.419) | 839(0.479) | 0.007 | NS | 0.786(0.660–0.937) | ||
| T T | 384(0.535) | 704(0.402) | 1.39×10−9 | 2.50×10−8 | 1.713(1.438–2.041) | ||
| C | 367(0.256) | 1259(0.359) | 2.03×10−12 | 3.65×10−11 | 0.613(0.534–0.703) | ||
| T | 1069(0.744) | 2247(0.641) | 2.03×10−12 | 3.65×10−11 | 1.632(1.423–1.872) | ||
| StageI | A A | 170(0.567) | 140(0.400) | 2.22×10−5 | 4×10−4 | 1.962(1.435–2.682) | |
| | A C | 120(0.400) | 174(0.497) | 0.013 | NS | 0.674(0.494–0.921) | |
| | C C | 10(0.033) | 36(0.103) | 0.001 | 0.018 | 0.301(0.147–0.617) | |
| | A | 460(0.767) | 454(0.649) | 3.39×10−6 | 6.1×10−5 | 1.780(1.394–2.274) | |
| | C | 140(0.233) | 246(0.351) | 3.39×10−6 | 6.1×10−5 | 0.562(0.440–0.717) | |
| StageI | A A | 271(0.903) | 293(0.837) | 0.013 | NS | 1.818(1.129–2.928) | |
| | A G | 29(0.097) | 56(0.160) | 0.017 | NS | 0.562(0.348–0.906) | |
| | G G | 0(0.000) | 1(0.003) | 0.354 | NS | | |
| | A | 57(0.952) | 642(0.917) | 0.013 | NS | 1.779(1.123–2.817) | |
| | G | 29(0.048) | 58(0.083) | 0.013 | NS | 0.562(0.355–0.890) | |
| StageI | A A | 58(0.193) | 100(0.286) | 0.006 | NS | 0.599(0.414–0.866) | |
| | A C | 173(0.577) | 199(0.569) | 0.835 | NS | 1.034(0.757–1.412) | |
| | C C | 69(0.230) | 51(0.146) | 0.006 | NS | 1.751(1.173–2.614) | |
| | A | 289(0.482) | 399(0.570) | 0.001 | 0.018 | 0.701(0.563–0.873) | |
| | C | 311(0.518) | 301(0.430) | 0.001 | 0.018 | 1.426(1.146–1.776) | |
| StageI | C C | 260(0.867) | 312(0.891 | 0.333 | NS | 0.792(0.493–1.271) | |
| | C T | 39(0.130) | 38(0.109) | 0.399 | NS | 1.227(0.762–1.975) | |
| | T T | 1(0.003) | 0(0.000) | 0.280 | NS | | |
| | C | 559(0.932) | 662(0.946) | 0.291 | NS | O.783(0.496–1.234) | |
| | T | 41(0.068) | 38(0.054) | 0.291 | NS | 1.278(0.810–2.015) | |
| StageI | T T | 168(0.560) | 130(0.371) | 1.51×10−6 | 2.72×10−5 | 2.154(1.572–2.950) | |
| | C T | 116(0.387) | 181(0.517) | 8.72×10−4 | 0.015687 | 0.589(0.430–0.805) | |
| | C C | 16(0.053) | 39(0.111) | 0.080 | NS | 0.449(0.246–0.822) | |
| | T | 452(0.753) | 441(0.630) | 1.75×10−6 | 3.15×10−5 | 1.794(1.410–2.282) | |
| C | 148(0.247) | 259(0.370) | 1.75×10−6 | 3.15×10−5 | 0.558(0.438–0.709) |
OR, odds ratio; Pc, Bonferroni corrected p value; SNP, single-nucleotide polymorphisms; NS, not significant
The first-stage study Genotype and allele frequencies of IL10 polymorphisms in Han Chinese VKH syndrome patients and healthy controls.
| C C | 28(0.093) | 44(0.126) | 0.190 | NS | 0.716(0.434–1.182) | |
| C T | 138(0.460) | 160(0.457) | 0.942 | NS | 1.012(0.742–1.378) | |
| T T | 134(0.447) | 146(0.417) | 0.449 | NS | 1.128(0.826–1.540) | |
| C | 194(0.323) | 248(0.354) | 0.240 | NS | 0.871(0.691–1.097) | |
| T | 406(0.677) | 452(0.646) | 0.240 | NS | 1.148(0.912–1.446) | |
| A A | 120(0.400) | 140(0.400) | 1 | NS | 1.000(0.730–1.370) | |
| A C | 160(0.533) | 174(0.497) | 0.357 | NS | 1.156(0.849–1.574) | |
| C C | 20(0.067) | 36(0.103) | 0.101 | NS | 0.623(0.352–1.101) | |
| A | 400(0.667) | 454(0.649) | 0.493 | NS | 1.084(0.861–1.364) | |
| C | 200(0.333) | 246(0.351) | 0.493 | NS | 0.923(0.733–1.161) | |
| A A | 252(0.840) | 293(0.837) | 0.921 | NS | 1.021(0.672–1.553) | |
| A G | 48(0.160) | 56(0.160) | 1 | NS | 1.000(0.657–1.523) | |
| G G | 0(0.000) | 1(0.003) | 0.354 | NS | | |
| A | 552(0.920) | 642(0.917) | 0.851 | NS | 1.039(0.697–1.548) | |
| G | 48(0.080) | 58(0.083) | 0.851 | NS | 0.963(0.646–1.434) | |
| A A | 76(0.253) | 100(0.286) | 0.354 | NS | 0.848(0.599–1.202) | |
| A C | 170(0.567) | 199(0.569) | 0.961 | NS | 0.992(0.727–1.355) | |
| C C | 54(0.180) | 51(0.146) | 0.236 | NS | 1.287(0.847–1.955) | |
| A | 322(0.537) | 399(0.570) | 0.228 | NS | 0.874(0.702–1.088) | |
| C | 278(0.463) | 301(0.430) | 0.228 | NS | 1.144(0.919–1.425) | |
| C C | 276(0.920) | 312(0.891) | 0.216 | NS | 1.401(0.819–2.394) | |
| C T | 24(0.080) | 38(0.109) | 0.216 | NS | 0.714(0.418–1.220) | |
| T T | | | | NS | | |
| C | 576(0.960) | 662(0.946) | 0.228 | NS | 1.378(0.817–2.324) | |
| T | 24(0.040) | 38(0.054) | 0.228 | NS | 0.726(0.0.430–1.225) | |
| T T | 124(0.413) | 130(0.371) | 0.275 | NS | 1.192(0.869–1.635) | |
| C T | 150(0.500) | 181(0.517) | 0.663 | NS | 0.934(0.686–1.271) | |
| C C | 26(0.087) | 39(0.111) | 0.294 | NS | 0.757(0.449–1.275) | |
| T | 398(0.663) | 441(0.630) | 0.210 | NS | 1.157(0.921–1.454) | |
| C | 202(0.337) | 259(0.370) | 0.210 | NS | 0.864(0.689–1.086) |
OR, odds ratio; Pc, Bonferroni corrected p value; SNP, single-nucleotide polymorphisms; NS, not significant
Figure 1The relative positions of the investigated SNPs and the LD analysis of the examined SNPs of IL-10. A: The relative positions of the investigated SNPs of IL10 tested in this study (red arrows). B: An LD analysis was performed for SNPs rs1800896, rs1800871, rs1800872, rs3790622, rs3021094, and rs1554286 based on our data using Haploview software version 4.2. The number in the square indicates r2 value.
The combined study genotype and allele frequencies of rs1800871 in BD patients and controls according to the Clinical features.
| Genital ulcers | C C | 19(0.046) | 210(0.120) | 1.15×10−5 | 1.38×10−4 | 0.354(0.219–0.574) |
| C T | 17(0.431) | 839(0.479) | 0.081 | NS | 0.825(0.665–1.024) | |
| T T | 21(0.523) | 704(0.402) | 7.11×10−6 | 8.53×10−5 | 1.634(1.317–2.026) | |
| C | 21(0.262) | 1259(0.359) | 1.01×10−7 | 1.21×10−6 | 0.632(0.533–0.749) | |
| T | 61(0.738) | 2247(0.641) | 1.01×10−7 | 1.21×10−6 | 1.582(1.335–1.875) | |
| Skin lesions | C C | 28(0.052) | 210(0.120) | 6.63×10−6 | 7.96×10−5 | 0.403(0.269–0.606) |
| C T | 21(0.405) | 839(0.479) | 0.003 | 0.036 | 0.742(0.610–0.903) | |
| T T | 29(0.543) | 704(0.402) | 7.59×10−9 | 9.11×10−8 | 1.769(1.456–2.149) | |
| C | 27(0.255) | 1259(0.359) | 2.13×10−10 | 2.56×10−9 | 0.610(0.523–0.711) | |
| T | 80(0.745) | 2247(0.641) | 2.13×10−10 | 2.56×10−9 | 1.640(1.407–1.912) | |
| Arthritis | C C | 7(0.071) | 210(0.120) | 0.14 | NS | 0.559(0.256–1.222) |
| C T | 47(0.475) | 839(0.479) | 0.94 | NS | 0.985(0.656–1.477) | |
| T T | 45(0.454) | 704(0.402) | 0.296 | NS | 1.242(0.827–1.865) | |
| C | 61(0.308) | 1259(0.359) | 0.145 | NS | 0.795(0.583–1.083) | |
| T | 137(0.692) | 2247(0.641) | 0.145 | NS | 1.258(0.923–1.715) | |
| Positive pathergy test | C C | 5(0.030) | 210(0.120) | 0.001 | 0.012 | 0.231(0.094–0.569) |
| C T | 71(0.433) | 839(0.479) | 0.263 | NS | 0.832(0.602–1.149) | |
| T T | 88(0.537) | 704(0.402) | 0.001 | 0.012 | 1.725(1.251–2.379) | |
| C | 81(0.247) | 1259(0.359) | 4.63×10−5 | 5.56×10−4 | 0.585(0.451–0.759) | |
| T | 247(0.753) | 2247(0.641) | 4.63×10−5 | 5.56×10−4 | 1.709(1.317–2.216) |
OR, odds ratio; Pc, Bonferroni corrected p value; SNP, single-nucleotide polymorphisms; NS, not significant
Haplotype results for IL10 SNPs including rs1800896, rs1800871, rs1800872, rs3790622, rs3021094, rs1554286.
| Block | Case, Control (%) | Chi Square | P Value |
|---|---|---|---|
| ACCATA | 0.397, 0.337 | 5.191 | 0.023 |
| AACATA | 0.228, 0.205 | 0.999 | 0.318 |
| 0.138, 0.253 | 27.279 | ||
| GACCCG | 0.035, 0.070 | 7.83 | 0.0051 |
| ACTATA | 0.056, 0.051 | 0.175 | 0.675 |
| GACATA | 0.034, 0.025 | 1.164 | 0.281 |
| ACCCTA | 0.033, 0.011 | 8.347 | 0.0039 |
| ACCACA | 0.013, 0.010 | 0.348 | 0.555 |
Figure 2Forest plots illustrate the association between IL-10 gene polymorphisms and BD in Chinese Han. For each study, the odds ratio (OR) and 95% confidence interval (CI) values are indicted. The size of each box is proportional to the weight of each study. The squares and horizontal lines correspond to the OR and 95% CI, and the diamond represents the summary OR and 95% CI. A: The rs1800871 T allele versus C allele. B: The rs3021094 A allele versus C allele. C: The rs3790622 T allele versus C allele.
Figure 3The expression of different genotypes of rs1800871/IL-10 at mRNA level in a stimulated condition by LPS or anti-CD3/CD28 antibodies. A: The relative expression of IL-10 mRNA in LPS-stimulated PBMCs obtained from healthy controls with the known IL-10 rs1800871 genotype. B: The relative expression of IL-10 mRNA by anti-CD3/CD28 antibody-stimulated PBMCs obtained from healthy controls with the known IL-10 rs1800871 genotype. The y-axis represents the IL-10 mRNA relative expression level through the real-time PCR of each genotype. Data are shown as mean ± SD. PBMCs included lymphocytes, such as T, B, and NK cells (90–95%), monocytes (3%), and Dendritic cells.