Literature DB >> 26014093

Post-molecular systematics and the future of phylogenetics.

R Alexander Pyron1.   

Abstract

The time is past when a research program in systematics should be based on only a few genes, extant taxa, and ultrametric trees. Cheap genome sequencing, powerful statistical methods, and new fossil discoveries promise to reinvigorate research programs in evolutionary biology. Population genetics, phylogeography, and species delimitation all benefit from genomic data, not just tree building alone. Null-hypothesis testing and power analysis via simulation can increase the confidence and robustness of phylogenetic comparative methods. Merging morphological and molecular datasets for fossil and extant taxa gives a more complete view of the Tree of Life. Combined, these developments can foster a post-molecular systematics, integrating phylogenetic signal from the population up based on DNA and through time based on direct observation rather than inference.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Keywords:  comparative methods; fossils; genomes; phylogenies; systematics; total evidence

Mesh:

Year:  2015        PMID: 26014093     DOI: 10.1016/j.tree.2015.04.016

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  14 in total

1.  Quantitative axial myology in two constricting snakes: Lampropeltis holbrooki and Pantherophis obsoletus.

Authors:  David A Penning
Journal:  J Anat       Date:  2018-02-27       Impact factor: 2.610

2.  Mass estimation of extinct taxa and phylogenetic hypotheses both influence analyses of character evolution in a large clade of birds (Telluraves).

Authors:  Nicholas M A Crouch; Roberta Mason-Gamer
Journal:  Proc Biol Sci       Date:  2019-12-18       Impact factor: 5.349

3.  Phylogenetic Signal and Bias in Paleontology.

Authors:  Robert J Asher; Martin R Smith
Journal:  Syst Biol       Date:  2022-06-16       Impact factor: 9.160

4.  Molecular phylogenies map to biogeography better than morphological ones.

Authors:  Jack W Oyston; Mark Wilkinson; Marcello Ruta; Matthew A Wills
Journal:  Commun Biol       Date:  2022-05-31

5.  Color Pattern on the Forewing of Micropterix (Lepidoptera: Micropterigidae): Insights into the Evolution of Wing Pattern and Wing Venation in Moths.

Authors:  Sandra R Schachat; Richard L Brown
Journal:  PLoS One       Date:  2015-10-05       Impact factor: 3.240

6.  Exploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic Reconstruction.

Authors:  Rosa Fernández; Gregory D Edgecombe; Gonzalo Giribet
Journal:  Syst Biol       Date:  2016-05-09       Impact factor: 15.683

7.  Morphological and molecular convergences in mammalian phylogenetics.

Authors:  Zhengting Zou; Jianzhi Zhang
Journal:  Nat Commun       Date:  2016-09-02       Impact factor: 14.919

8.  Early-branching euteleost relationships: areas of congruence between concatenation and coalescent model inferences.

Authors:  Matthew A Campbell; Michael E Alfaro; Max Belasco; J Andrés López
Journal:  PeerJ       Date:  2017-09-08       Impact factor: 2.984

9.  Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics.

Authors:  Mohammad Vatanparast; Adrian Powell; Jeff J Doyle; Ashley N Egan
Journal:  Appl Plant Sci       Date:  2018-04-02       Impact factor: 1.936

10.  Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera).

Authors:  Maria Heikkilä; Marko Mutanen; Niklas Wahlberg; Pasi Sihvonen; Lauri Kaila
Journal:  BMC Evol Biol       Date:  2015-11-21       Impact factor: 3.260

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.