Literature DB >> 26013490

A Trigger Residue for Transmembrane Signaling in the Escherichia coli Serine Chemoreceptor.

Smiljka Kitanovic1, Peter Ames1, John S Parkinson2.   

Abstract

UNLABELLED: The transmembrane Tsr protein of Escherichia coli mediates chemotactic responses to environmental serine gradients. Serine binds to the periplasmic domain of the homodimeric Tsr molecule, promoting a small inward displacement of one transmembrane helix (TM2). TM2 piston displacements, in turn, modulate the structural stability of the Tsr-HAMP domain on the cytoplasmic side of the membrane to control the autophosphorylation activity of the signaling CheA kinase bound to the membrane-distal cytoplasmic tip of Tsr. A five-residue control cable segment connects TM2 to the AS1 helix of HAMP and transmits stimulus and sensory adaptation signals between them. To explore the possible role of control cable helicity in transmembrane signaling by Tsr, we characterized the signaling properties of mutant receptors with various control cable alterations. An all-alanine control cable shifted Tsr output toward the kinase-on state, whereas an all-glycine control cable prevented Tsr from reaching either a fully on or fully off output state. Restoration of the native isoleucine (I214) in these synthetic control cables largely alleviated their signaling defects. Single amino acid replacements at Tsr-I214 shifted output toward the kinase-off (L, N, H, and R) or kinase-on (A and G) states, whereas other control cable residues tolerated most amino acid replacements with little change in signaling behavior. These findings indicate that changes in control cable helicity might mediate transitions between the kinase-on and kinase-off states during transmembrane signaling by chemoreceptors. Moreover, the Tsr-I214 side chain plays a key role, possibly through interaction with the membrane interfacial environment, in triggering signaling changes in response to TM2 piston displacements. IMPORTANCE: The Tsr protein of E. coli mediates chemotactic responses to environmental serine gradients. Stimulus signals from the Tsr periplasmic sensing domain reach its cytoplasmic kinase control domain through piston displacements of a membrane-spanning helix and an adjoining five-residue control cable segment. We characterized the signaling properties of Tsr variants to elucidate the transmembrane signaling role of the control cable, an element present in many microbial sensory proteins. Both the kinase-on and kinase-off output states of Tsr depended on control cable helicity, but only one residue, I214, was critical for triggering responses to attractant inputs. These findings suggest that signal transmission in Tsr involves modulation of control cable helicity through interaction of the I214 side chain with the cytoplasmic membrane.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26013490      PMCID: PMC4518824          DOI: 10.1128/JB.00274-15

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  47 in total

Review 1.  Signaling mechanisms of HAMP domains in chemoreceptors and sensor kinases.

Authors:  John S Parkinson
Journal:  Annu Rev Microbiol       Date:  2010       Impact factor: 15.500

2.  Mutational analysis of the transmembrane helix 2-HAMP domain connection in the Escherichia coli aspartate chemoreceptor tar.

Authors:  Gus A Wright; Rachel L Crowder; Roger R Draheim; Michael D Manson
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

3.  Precision and kinetics of adaptation in bacterial chemotaxis.

Authors:  Yigal Meir; Vladimir Jakovljevic; Olga Oleksiuk; Victor Sourjik; Ned S Wingreen
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

4.  Transmembrane signaling of chemotaxis receptor tar: insights from molecular dynamics simulation studies.

Authors:  Hahnbeom Park; Wonpil Im; Chaok Seok
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

5.  Prolonged stimuli alter the bacterial chemosensory clusters.

Authors:  Vered Frank; Ady Vaknin
Journal:  Mol Microbiol       Date:  2013-04-14       Impact factor: 3.501

6.  Mutational analysis of the control cable that mediates transmembrane signaling in the Escherichia coli serine chemoreceptor.

Authors:  Smiljka Kitanovic; Peter Ames; John S Parkinson
Journal:  J Bacteriol       Date:  2011-07-29       Impact factor: 3.490

7.  Biphasic control logic of HAMP domain signalling in the Escherichia coli serine chemoreceptor.

Authors:  Qin Zhou; Peter Ames; John S Parkinson
Journal:  Mol Microbiol       Date:  2011-02-24       Impact factor: 3.501

8.  Engineered socket study of signaling through a four-helix bundle: evidence for a yin-yang mechanism in the kinase control module of the aspartate receptor.

Authors:  Kalin E Swain; Miguel A Gonzalez; Joseph J Falke
Journal:  Biochemistry       Date:  2009-10-06       Impact factor: 3.162

9.  Mutational analyses of HAMP helices suggest a dynamic bundle model of input-output signalling in chemoreceptors.

Authors:  Qin Zhou; Peter Ames; John S Parkinson
Journal:  Mol Microbiol       Date:  2009-07-28       Impact factor: 3.501

10.  Transmembrane helix dynamics of bacterial chemoreceptors supports a piston model of signalling.

Authors:  Benjamin A Hall; Judith P Armitage; Mark S P Sansom
Journal:  PLoS Comput Biol       Date:  2011-10-20       Impact factor: 4.779

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  11 in total

1.  Stability and Conformation of a Chemoreceptor HAMP Domain Chimera Correlates with Signaling Properties.

Authors:  Nattakan Sukomon; Joanne Widom; Peter P Borbat; Jack H Freed; Brian R Crane
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

2.  Signaling Consequences of Structural Lesions that Alter the Stability of Chemoreceptor Trimers of Dimers.

Authors:  Run-Zhi Lai; Khoosheh K Gosink; John S Parkinson
Journal:  J Mol Biol       Date:  2017-02-16       Impact factor: 5.469

3.  Evidence for a Helix-Clutch Mechanism of Transmembrane Signaling in a Bacterial Chemoreceptor.

Authors:  Peter Ames; Samuel Hunter; John S Parkinson
Journal:  J Mol Biol       Date:  2016-03-24       Impact factor: 5.469

4.  Phenotypic diversity and temporal variability in a bacterial signaling network revealed by single-cell FRET.

Authors:  Johannes M Keegstra; Keita Kamino; François Anquez; Milena D Lazova; Thierry Emonet; Thomas S Shimizu
Journal:  Elife       Date:  2017-12-12       Impact factor: 8.140

5.  Structural signatures of Escherichia coli chemoreceptor signaling states revealed by cellular crosslinking.

Authors:  Caralyn E Flack; John S Parkinson
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-05       Impact factor: 12.779

6.  Noncritical Signaling Role of a Kinase-Receptor Interaction Surface in the Escherichia coli Chemosensory Core Complex.

Authors:  Germán E Piñas; Michael D DeSantis; John S Parkinson
Journal:  J Mol Biol       Date:  2018-02-14       Impact factor: 5.469

7.  Inverted signaling by bacterial chemotaxis receptors.

Authors:  Shuangyu Bi; Fan Jin; Victor Sourjik
Journal:  Nat Commun       Date:  2018-07-26       Impact factor: 14.919

8.  Conformational shifts in a chemoreceptor helical hairpin control kinase signaling in Escherichia coli.

Authors:  Qun Gao; Anchun Cheng; John S Parkinson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-17       Impact factor: 11.205

9.  In Situ Conformational Changes of the Escherichia coli Serine Chemoreceptor in Different Signaling States.

Authors:  Wen Yang; C Keith Cassidy; Peter Ames; Christoph A Diebolder; Klaus Schulten; Zaida Luthey-Schulten; John S Parkinson; Ariane Briegel
Journal:  mBio       Date:  2019-07-02       Impact factor: 7.867

10.  Signaling and Adaptation Modulate the Dynamics of the Photosensoric Complex of Natronomonas pharaonis.

Authors:  Philipp S Orekhov; Daniel Klose; Armen Y Mulkidjanian; Konstantin V Shaitan; Martin Engelhard; Johann P Klare; Heinz-Jürgen Steinhoff
Journal:  PLoS Comput Biol       Date:  2015-10-23       Impact factor: 4.475

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