Literature DB >> 21044573

Precision and kinetics of adaptation in bacterial chemotaxis.

Yigal Meir1, Vladimir Jakovljevic, Olga Oleksiuk, Victor Sourjik, Ned S Wingreen.   

Abstract

The chemotaxis network of the bacterium Escherichia coli is perhaps the most studied model for adaptation of a signaling system to persistent stimuli. Although adaptation in this system is generally considered to be precise, there has been little effort to quantify this precision, or to understand how and when precision fails. Using a Förster resonance energy transfer-based reporter of signaling activity, we undertook a systematic study of adaptation kinetics and precision in E. coli cells expressing a single type of chemoreceptor (Tar). Quantifiable loss of precision of adaptation was observed at levels of the attractant MeAsp as low 10 μM, with pronounced differences in both kinetics and precision of adaptation between addition and removal of attractant. Quantitative modeling of the kinetic data suggests that loss of precise adaptation is due to a slowing of receptor methylation as available modification sites become scarce. Moreover, the observed kinetics of adaptation imply large cell-to-cell variation in adaptation rates-potentially providing genetically identical cells with the ability to "hedge their bets" by pursuing distinct chemotactic strategies.
Copyright © 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21044573      PMCID: PMC2965943          DOI: 10.1016/j.bpj.2010.08.051

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

1.  Linking stochastic dynamics to population distribution: an analytical framework of gene expression.

Authors:  Nir Friedman; Long Cai; X Sunney Xie
Journal:  Phys Rev Lett       Date:  2006-10-19       Impact factor: 9.161

2.  In vivo measurement by FRET of pathway activity in bacterial chemotaxis.

Authors:  Victor Sourjik; Ady Vaknin; Thomas S Shimizu; Howard C Berg
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

3.  A concentration-dependent switch in the bacterial response to temperature.

Authors:  Hanna Salman; Albert Libchaber
Journal:  Nat Cell Biol       Date:  2007-08-12       Impact factor: 28.824

Review 4.  Bacterial chemoreceptors: high-performance signaling in networked arrays.

Authors:  Gerald L Hazelbauer; Joseph J Falke; John S Parkinson
Journal:  Trends Biochem Sci       Date:  2007-12-31       Impact factor: 13.807

Review 5.  Bistability, epigenetics, and bet-hedging in bacteria.

Authors:  Jan-Willem Veening; Wiep Klaas Smits; Oscar P Kuipers
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

6.  Modeling the chemotactic response of Escherichia coli to time-varying stimuli.

Authors:  Yuhai Tu; Thomas S Shimizu; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-23       Impact factor: 11.205

7.  Location and architecture of the Caulobacter crescentus chemoreceptor array.

Authors:  Ariane Briegel; H Jane Ding; Zhuo Li; John Werner; Zemer Gitai; D Prabha Dias; Rasmus B Jensen; Grant J Jensen
Journal:  Mol Microbiol       Date:  2008-03-19       Impact factor: 3.501

8.  Role of translational coupling in robustness of bacterial chemotaxis pathway.

Authors:  Linda Løvdok; Kajetan Bentele; Nikita Vladimirov; Anette Müller; Ferencz S Pop; Dirk Lebiedz; Markus Kollmann; Victor Sourjik
Journal:  PLoS Biol       Date:  2009-08-18       Impact factor: 8.029

9.  Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation.

Authors:  Clinton H Hansen; Robert G Endres; Ned S Wingreen
Journal:  PLoS Comput Biol       Date:  2007-11-20       Impact factor: 4.475

10.  Dependence of bacterial chemotaxis on gradient shape and adaptation rate.

Authors:  Nikita Vladimirov; Linda Løvdok; Dirk Lebiedz; Victor Sourjik
Journal:  PLoS Comput Biol       Date:  2008-12-19       Impact factor: 4.475

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  23 in total

Review 1.  Responding to chemical gradients: bacterial chemotaxis.

Authors:  Victor Sourjik; Ned S Wingreen
Journal:  Curr Opin Cell Biol       Date:  2011-12-09       Impact factor: 8.382

2.  Mistic and TarCF as fusion protein partners for functional expression of the cannabinoid receptor 2 in Escherichia coli.

Authors:  Ananda Chowdhury; Rentian Feng; Qin Tong; Yuxun Zhang; Xiang-Qun Xie
Journal:  Protein Expr Purif       Date:  2012-03-03       Impact factor: 1.650

3.  Optogenetic Manipulation of Cyclic Di-GMP (c-di-GMP) Levels Reveals the Role of c-di-GMP in Regulating Aerotaxis Receptor Activity in Azospirillum brasilense.

Authors:  Lindsey O'Neal; Min-Hyung Ryu; Mark Gomelsky; Gladys Alexandre
Journal:  J Bacteriol       Date:  2017-08-22       Impact factor: 3.490

4.  Thermal robustness of signaling in bacterial chemotaxis.

Authors:  Olga Oleksiuk; Vladimir Jakovljevic; Nikita Vladimirov; Ricardo Carvalho; Eli Paster; William S Ryu; Yigal Meir; Ned S Wingreen; Markus Kollmann; Victor Sourjik
Journal:  Cell       Date:  2011-04-15       Impact factor: 41.582

5.  Universal response-adaptation relation in bacterial chemotaxis.

Authors:  Anna K Krembel; Silke Neumann; Victor Sourjik
Journal:  J Bacteriol       Date:  2014-11-03       Impact factor: 3.490

6.  Characterization of the adaptation module of the signaling network in bacterial chemotaxis by measurement of step responses.

Authors:  Junhua Yuan; Howard C Berg
Journal:  Biophys J       Date:  2012-09-19       Impact factor: 4.033

7.  Paradoxical enhancement of chemoreceptor detection sensitivity by a sensory adaptation enzyme.

Authors:  Run-Zhi Lai; Xue-Sheng Han; Frederick W Dahlquist; John S Parkinson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-21       Impact factor: 11.205

8.  Evidence for a Helix-Clutch Mechanism of Transmembrane Signaling in a Bacterial Chemoreceptor.

Authors:  Peter Ames; Samuel Hunter; John S Parkinson
Journal:  J Mol Biol       Date:  2016-03-24       Impact factor: 5.469

9.  Fundamental constraints on the abundances of chemotaxis proteins.

Authors:  Anne-Florence Bitbol; Ned S Wingreen
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

Review 10.  Quantitative modeling of bacterial chemotaxis: signal amplification and accurate adaptation.

Authors:  Yuhai Tu
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

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