| Literature DB >> 26005639 |
Prithvi Kumar Singh1, Girish Chandra1, Jaishri Bogra1, Rajni Gupta1, Vijay Kumar2, Amita Jain3, Syed Rizwan Hussain4, Abbas Ali Mahdi4, Mohammad Kaleem Ahmad4.
Abstract
PURPOSE: Interleukin-6 (IL-6) encodes a cytokine protein, which causes inflammation, maintains immune homeostasis and plays an essential role in oral pathogenesis. The aim of this study was to evaluate the association between IL-6 (- 174 and - 572) G/C promoter gene polymorphisms and risk of OSCC among Indians.Entities:
Keywords: Genotype; Immune response; Inflammation; OSCC; PCR-RFLP
Year: 2015 PMID: 26005639 PMCID: PMC4436510 DOI: 10.1016/j.mgene.2015.03.002
Source DB: PubMed Journal: Meta Gene ISSN: 2214-5400
Primer sequences and restriction enzyme for IL-6 gene polymorphism.
| SNP locus | Primer sequence | Restriction enzyme | Product size (bp) |
|---|---|---|---|
| IL6 (− 174G/C) | F-5′-ttgtcaagacatgccaagtgct-3′ | G: 244 + 133 + 11 | |
| IL6 (− 572G/C) | F-5′-ggagacgccttgaagtaactgc-3′ | G: 102, 61 |
SNP, single nucleotide polymorphisms.
Fig. 1PCR-RFLP analysis for IL-6 − 174G/C genotyping. The PCR-amplified product was 300 bp. The fragments after digestion with NlaIII (lanes 1: 100 bp ladder, lanes 2, 4: GG, lanes 3, 6, 8, 9: GC and lanes 5, 7: CC genotype) were obtained.
Fig. 2PCR-RFLP analysis for IL-6 − 572G/C genotyping. The PCR-amplified product was 163 bp. The fragments after digestion with MbiI (lanes 1: 100 bp ladder, lanes 2, 3, 4, 5, 8, 9: GC, lanes 6, 10, 11: GG and lane 7: CC genotype) were obtained.
The genotype and allele frequencies of IL-6 (- 174 G/C and - 572 G/C) gene polymorphisms.
| Controls | OSCC n = 272 (%) | p- Value | OR (95% CI) | OSCC with cancer stages I & II | p- Value | OR (95% CI) | OSCC with cancer stages III & IV | p- Value | OR (95% CI) | |
|---|---|---|---|---|---|---|---|---|---|---|
| GG | 129 (69.73) | 150 (55.15) | - | - | 96 (54.86) | - | - | 54 (55.67) | - | - |
| GC | 47 (25.41) | 101 (37.13) | 0.005 | 1.848 | 66 (37.72) | 0.009 | 1.887 | 35 (36.08) | 0.05 | 1.779 |
| CC | 9 (4.86) | 21 (7.72) | 0.132 | 2.007 | 13 (7.42) | 0.2092 | 1.941 | 8 (8.25) | 0.222 | 2.123 |
| G | 305 (82.43) | 401 (73.71) | - | - | 258 (73.72) | - | - | 143 (73.72) | - | - |
| C | 65 (17.57) | 143 (26.29) | 0.003 | 1.673 | 92 (26.28) | 0.006 | 1.673 | 51 (26.28) | 0.0201 | 1.673 |
| GG | 57 (30.81) | 75 (27.57) | - | - | 44 (25.14) | - | - | 31 (31.95) | - | - |
| GC | 115 (62.16) | 175 (64.34) | 0.564 | 1.157 | 115 (65.72) | 0.337 | 1.295 | 60 (61.87) | 0.988 | 0.959 |
| CC | 13 (7.03) | 22 (8.09) | 0.6519 | 1.286 | 16 (9.14) | 0.371 | 1.594 | 6 (6.18) | 0.970 | 0.849 |
| G | 219 (59.29) | 325 (59.74) | - | - | 203 (58.00) | - | - | 121 (62.37) | - | - |
| C | 141 (40.71) | 219 (40.26) | 0.796 | 1.047 | 147 (42.00) | 0.489 | 1.125 | 72 (37.63) | 0.736 | 0.924 |
= Significant value
Genotype distribution of IL-6 (− 174G/C) in tobacco chewing, smoking and alcohol consumption.
| OSCC patients | Controls | OR (95% CI) | ||
|---|---|---|---|---|
| Genotypes | ||||
| GG | 87 (52.10) | 58 (65.91) | – | |
| GC | 67 (40.12) | 25 (28.41) | 0.560 (0.318–0.987) | 0.051 |
| CC | 13 (7.78) | 5 (5.68) | 0.578 (0.195–1.705) | 0.455 |
| Genotypes | ||||
| GG | 47 (56.63) | 30 (75.00) | – | |
| GC | 31 (37.34) | 7 (17.5) | 0.354 (0.138–0.905) | 0.045 |
| CC | 5 (6.03) | 3 (7.50) | 0.940 (0.209–4.23) | 0.936 |
| Genotypes | ||||
| GG | 19 (50.00) | 16 (76.19) | – | |
| GC | 15 (39.47) | 3 (14.29) | 0.238 (0.058–0.970) | 0.074 |
| CC | 4 (10.53) | 2 (9.52) | 0.594 (0.096–3.677) | 0.905 |
Significant value.
Association between IL-6 − 572G/C genetic variations and genetic variations and tobacco chewing, smoking and alcohol consumption.
| OSCC patients | Controls | OR (95% CI) | ||
|---|---|---|---|---|
| Genotypes | ||||
| GG | 41 (24.56) | 30 (34.09) | – | |
| GC | 113 (67.66) | 54 (61.36) | 0.653 (0.369–1.157) | 0.188 |
| CC | 13 (7.78) | 4 (4.55) | 0.421 (0.125–1.418) | 0.251 |
| Genotypes | ||||
| GG | 17 (20.48) | 17 (42.5) | – | |
| GC | 56 (67.47) | 22 (55.0) | 0.421 (0.125–1.418) | 0.251 |
| CC | 10 (12.05) | 1 (2.5) | 0.137 (0.017–1.127) | 0.076 |
| Genotypes | ||||
| GG | 8 (21.06) | 13 (61.90) | – | |
| GC | 25 (65.78) | 8 (38.10) | 0.197 (0.06–0.646 | 0.013 |
| CC | 5 (13.16) | 0 (0.00) | 0.057 (0.003–1.173) | 0.047 |
Significant value.
IL-6 (− 174) G/C and (− 572) G/C gene polymorphisms and tumor stage, tumor T status and lymph node in OSCC patients.
| IL-6 (− 174) G/C genotype | ||||
|---|---|---|---|---|
| I + II | III + IV | OR (95% CI) | ||
| Genotypes | ||||
| GG | 96 (54.86) | 54 (55.67) | – | |
| GC | 66 (37.72) | 35 (36.08) | 0.9428 (0.5558–1.599) | 0.9329 |
| CC | 13 (7.42) | 8 (8.25) | 1.094 (0.4265–2.806) | 0.8516 |
| Alleles | ||||
| G | 258 (73.72) | 143 (73.72) | – | |
| C | 92 (26.28) | 51 (26.28) | 1.000 (0.6713–1.490) | 0.9994 |
| Tumor T status | ≤ T2 | > T2 | OR (95% CI) | |
| Genotypes | ||||
| GG | 103 (53.37) | 47 (59.49) | – | |
| GC | 76 (39.37) | 25 (31.65) | 0.7209 (0.4082–1.273) | 0.3231 |
| CC | 14 (7.26) | 7 (8.86) | 1.096 (0.4150–2.893) | 0.8535 |
| Alleles | ||||
| G | 282 (73.06) | 119 (75.32) | ||
| C | 104 (26.94) | 39 (24.68) | 0.8887 (0.5804–1.361) | 0.6627 |
| Lymph node | N0 | N1 + N2 | OR (95% CI) | |
| Genotypes | ||||
| GG | 112 (54.64) | 38 (56.71) | – | |
| GC | 79 (38.54) | 22 (32.84) | 0.8208 (0.4509–1.494) | 0.6199 |
| CC | 14 (6.82) | 7 (10.45) | 1.474 (0.5535–3.924) | 0.6064 |
| Alleles | ||||
| G | 303 (73.90) | 98 (73.13) | – | |
| C | 107 (26.10) | 36 (26.87) | 1.040 (0.6692–1.617) | 0.9503 |
| Il-6 (− 572) G/C gene polymorphisms | ||||
| I + II | III + IV | OR (95% CI) | ||
| Genotypes | ||||
| GG | 44 (25.14) | 31 (31.95) | – | |
| GC | 115 (65.72) | 60 (61.87) | 0.7405 (0.4248–1.291) | 0.3587 |
| CC | 16 (9.14) | 6 (6.18) | 0.5323 (0.1872–1.513) | 0.3450 |
| Alleles | ||||
| G | 203 (58.00) | 121 (62.37) | – | |
| C | 147 (42.00) | 72 (37.63) | 0.8217 (0.5728–1.179) | 0.3291 |
| Tumor T status | ≤ T2 | > T2 | OR (95% CI) | |
| Genotypes | ||||
| GG | 50 (25.91) | 25 (31.65) | – | |
| GC | 126 (65.28) | 49 (62.03) | 0.7778 (0.4343–1.393) | 0.4868 |
| CC | 17 (8.81) | 5 (6.32) | 0.5882 (0.1944–1.779) | 0.4939 |
| Alleles | ||||
| G | 226 (58.55) | 99 (62.66) | – | |
| C | 160 (41.45) | 59 (37.34) | 0.8418 (0.5752–1.232) | 0.4290 |
| Lymph node status | N0 | N1 + N2 | OR (95% CI) | |
| Genotypes | ||||
| GG | 55 (26.83) | 20 (29.85) | – | |
| GC | 133 (64.88) | 42 (62.69) | 0.8684 (0.4679–1.612) | 0.7736 |
| CC | 17 (8.29) | 5 (7.46) | 0.8088 (0.2636–2.482) | 0.9249 |
| Alleles | ||||
| G | 243 (59.27) | 82 (61.19) | – | |
| C | 167 (40.73) | 52 (38.81) | 0.9227 (0.6188–1.376) | 0.7694 |