| Literature DB >> 35463731 |
Hamideh Kadeh1, Mohammad Eyni2, Maliheh Parsasefat2, Ebrahim Miri-Moghaddam3.
Abstract
Background & Objective: CCL4 (C-C chemokine ligand4) is a chemoattractant involved in tumors' development, progression, and metastasis. The relationship between the ccl4 gene polymorphisms and the risk of OSCC has not been studied in Iran. This study aimed to identify the effect of ccl4 gene polymorphism on OSCC susceptibility in the population of Southeastern Iran.Entities:
Keywords: Gene polymorphism; Oral squamous cell carcinoma; ccl4
Year: 2022 PMID: 35463731 PMCID: PMC9013867 DOI: 10.30699/IJP.2022.538948.2725
Source DB: PubMed Journal: Iran J Pathol ISSN: 1735-5303
Primer sequences and product size for Rs 10491121 and rs1634507 SNPs genotyping
| Variable | Primers sequencing | Product size (bp) |
|---|---|---|
| rs1634507 |
|
|
| rs10491121 | F-outer: 5′-GGTCCAAGAAAATATCCTGAAATC-3′ |
|
Fig. 1Gel electrophoresis of PCR products of rs10491121 and 1634507 on 2.5 % agarose gel. Wells 1 to 5 show electrophoresis of rs10491121 genotypes (wells 1 and 5; AG, 2 and 3; GG and well 4; AA genotype) and well 6; size marker 100 bp. Wells 7-11 show electrophoresis of 1634507 genotypes (Well 7; AC, Well 8; AA, and 9-11; CC genotype).
Odds ratio (OR) and 95% confidence interval (CI) of OSCC (50 cases and 50 control) associated with CCL4 genotypic and allelic frequencies
| Variable | Genotypes/Alleles | Case | Control | P | OR (95% CI) |
|---|---|---|---|---|---|
|
|
|
|
|
| |
| rs10491121 | GG | 25 (50%) | 26 (52%) | - |
|
| AG | 18 (36%) | 20 (40%) | 0.88 |
| |
| AA | 7 (14%) | 4 (8%) | 0.38 |
| |
| AA+AG | 25 (50%) | 24 (48%) | 0.84 |
| |
| Allele G | 68 (68%) | 72 (72%) | - |
| |
| Allele A | 32 (32%) | 28 (28%) | 0.54 |
| |
| rs1634507 | CC | 23 (46%) | 30 (60%) | - |
|
| AC | 24 (48%) | 19 (38%) | 0.23 |
| |
| AA | 3 (6%) | 1 (2%) | 0.25 |
| |
| AA+AC | 27 (54%) | 20 (40%) | 0.16 |
| |
| Allele C | 79 (79%) | 70 (70%) | - |
|
Distribution of CCL4 genotypic in OSCC cases according to histopathological grades
| Variable Genotypes | Histopathological Grade | P-value | |||
|---|---|---|---|---|---|
| W. D1 | M.D2 | P.D3 | |||
|
|
|
|
| ||
| rs10491121 | GG | 10 (47.6) | 12 (60) | 3 (33.3) |
|
| GA | 8 (38.1) | 6 (30) | 4 (44.4) | ||
| AA | 3(14.3) | 2 (10) | 2 (22.2) | ||
| Total | 21 (100) | 20 (100) | 9 (100) | ||
| rs 1634507 | CC | 12 (57.1) | 8 (40) | 3 (33.3) |
|
| AC | 8 (38.1) | 12 (60) | 4 (44.4) | ||
| AA | 1 (4.8) | 0 (0) | 2 (22.2) | ||
1. Well-Differentiated, 2. Moderately Differentiated, 3. Poorly Differentiated