Literature DB >> 26004672

The MARK-AGE extended database: data integration and pre-processing.

J Baur1, T Kötter2, M Moreno-Villanueva1, T Sindlinger1, M R Berthold2, A Bürkle3, M Junk4.   

Abstract

MARK-AGE is a recently completed European population study, where bioanalytical and anthropometric data were collected from human subjects at a large scale. To facilitate data analysis and mathematical modelling, an extended database had to be constructed, integrating the data sources that were part of the project. This step involved checking, transformation and documentation of data. The success of downstream analysis mainly depends on the preparation and quality of the integrated data. Here, we present the pre-processing steps applied to the MARK-AGE data to ensure high quality and reliability in the MARK-AGE Extended Database. Various kinds of obstacles that arose during the project are highlighted and solutions are presented.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Data entry; Data extraction; Data integration; Data processing; Database; KNIME

Mesh:

Year:  2015        PMID: 26004672     DOI: 10.1016/j.mad.2015.05.006

Source DB:  PubMed          Journal:  Mech Ageing Dev        ISSN: 0047-6374            Impact factor:   5.432


  3 in total

1.  DNA Methylation Analysis of Ribosomal DNA in Adults With Down Syndrome.

Authors:  Francesco Ravaioli; Michele Zampieri; Luca Morandi; Chiara Pirazzini; Camilla Pellegrini; Sara De Fanti; Noémie Gensous; Gian Luca Pirazzoli; Luisa Sambati; Alessandro Ghezzo; Fabio Ciccarone; Anna Reale; Daniela Monti; Stefano Salvioli; Paola Caiafa; Miriam Capri; Alexander Bürkle; Maria Moreno-Villanueva; Paolo Garagnani; Claudio Franceschi; Maria Giulia Bacalini
Journal:  Front Genet       Date:  2022-04-27       Impact factor: 4.772

2.  Ageing affects subtelomeric DNA methylation in blood cells from a large European population enrolled in the MARK-AGE study.

Authors:  Maria Giulia Bacalini; Anna Reale; Marco Malavolta; Fabio Ciccarone; María Moreno-Villanueva; Martijn E T Dollé; Eugène Jansen; Tilman Grune; Efstathios S Gonos; Christiane Schön; Jürgen Bernhardt; Beatrix Grubeck-Loebenstein; Ewa Sikora; Olivier Toussaint; Florence Debacq-Chainiaux; Miriam Capri; Antti Hervonen; Mikko Hurme; P Eline Slagboom; Nicolle Breusing; Valentina Aversano; Stefano Tagliatesta; Claudio Franceschi; Maria A Blasco; Alexander Bürkle; Paola Caiafa; Michele Zampieri
Journal:  Geroscience       Date:  2021-04-19       Impact factor: 7.713

3.  DNA Hydroxymethylation Levels Are Altered in Blood Cells From Down Syndrome Persons Enrolled in the MARK-AGE Project.

Authors:  Fabio Ciccarone; Elisabetta Valentini; Marco Malavolta; Michele Zampieri; Maria Giulia Bacalini; Roberta Calabrese; Tiziana Guastafierro; Anna Reale; Claudio Franceschi; Miriam Capri; Nicolle Breusing; Tilman Grune; María Moreno-Villanueva; Alexander Bürkle; Paola Caiafa
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2018-05-09       Impact factor: 6.053

  3 in total

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