Literature DB >> 26002732

Current Approaches for Investigating and Predicting Cytochrome P450 3A4-Ligand Interactions.

Irina F Sevrioukova1, Thomas L Poulos.   

Abstract

Cytochrome P450 3A4 (CYP3A4) is the major and most important drug-metabolizing enzyme in humans that oxidizes and clears over a half of all administered pharmaceuticals. This is possible because CYP3A4 is promiscuous with respect to substrate binding and has the ability to catalyze diverse oxidative chemistries in addition to traditional hydroxylation reactions. Furthermore, CYP3A4 binds and oxidizes a number of substrates in a cooperative manner and can be both induced and inactivated by drugs. In vivo, CYP3A4 inhibition could lead to undesired drug-drug interactions and drug toxicity, a major reason for late-stage clinical failures and withdrawal of marketed pharmaceuticals. Owing to its central role in drug metabolism, many aspects of CYP3A4 catalysis have been extensively studied by various techniques. Here, we give an overview of experimental and theoretical methods currently used for investigation and prediction of CYP3A4-ligand interactions, a defining factor in drug metabolism, with an emphasis on the problems addressed and conclusions derived from the studies.

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Year:  2015        PMID: 26002732      PMCID: PMC4532289          DOI: 10.1007/978-3-319-16009-2_3

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  121 in total

1.  A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules.

Authors:  Suresh B Singh; Lucy Q Shen; Matthew J Walker; Robert P Sheridan
Journal:  J Med Chem       Date:  2003-04-10       Impact factor: 7.446

2.  A steered molecular dynamics method with adaptive direction adjustments.

Authors:  Kun Yang; Xinli Liu; Xicheng Wang; Hualiang Jiang
Journal:  Biochem Biophys Res Commun       Date:  2008-12-30       Impact factor: 3.575

3.  Mixing apples and oranges: Analysis of heterotropic cooperativity in cytochrome P450 3A4.

Authors:  Daniel J Frank; Ilia G Denisov; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2009-06-26       Impact factor: 4.013

4.  Measurement of substrate and inhibitor binding to microsomal cytochrome P-450 by optical-difference spectroscopy.

Authors:  C R Jefcoate
Journal:  Methods Enzymol       Date:  1978       Impact factor: 1.600

5.  Mechanism of cytochrome P4503A4- and 2D6-catalyzed dehydrogenation of ezlopitant as probed with isotope effects using five deuterated analogs.

Authors:  R S Obach
Journal:  Drug Metab Dispos       Date:  2001-12       Impact factor: 3.922

6.  Time-resolved fluorescence studies of heterotropic ligand binding to cytochrome P450 3A4.

Authors:  Jed N Lampe; William M Atkins
Journal:  Biochemistry       Date:  2006-10-10       Impact factor: 3.162

7.  Thermodynamic studies of substrate binding and spin transitions in human cytochrome P-450 3A4 expressed in yeast microsomes.

Authors:  J P Renaud; D R Davydov; K P Heirwegh; D Mansuy; G H Hui Bon Hoa
Journal:  Biochem J       Date:  1996-11-01       Impact factor: 3.857

8.  Photochromic agents as tools for protein structure study: lapachenole is a photoaffinity ligand of cytochrome P450 3A4.

Authors:  Carlos A Gartner; Bo Wen; Jiandi Wan; Ralph S Becker; Guilford Jones; Steven P Gygi; Sidney D Nelson
Journal:  Biochemistry       Date:  2005-02-15       Impact factor: 3.162

9.  Effect of glutathione on homo- and heterotropic cooperativity in cytochrome P450 3A4.

Authors:  Dmitri R Davydov; Nadezhda Y Davydova; Tamara N Tsalkova; James R Halpert
Journal:  Arch Biochem Biophys       Date:  2008-01-11       Impact factor: 4.013

10.  Generation and validation of rapid computational filters for cyp2d6 and cyp3a4.

Authors:  Sean Ekins; Jennifer Berbaum; Richard K Harrison
Journal:  Drug Metab Dispos       Date:  2003-09       Impact factor: 3.922

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  18 in total

1.  Steroid bioconjugation to a CYP3A4 allosteric site and its effect on substrate binding and coupling efficiency.

Authors:  Vanja Polic; Irina F Sevrioukova; Karine Auclair
Journal:  Arch Biochem Biophys       Date:  2018-06-26       Impact factor: 4.013

Review 2.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

3.  Numerical Methods for Modeling Enzyme Kinetics.

Authors:  Jaydeep Yadav; Ken Korzekwa; Swati Nagar
Journal:  Methods Mol Biol       Date:  2021

4.  Structural basis for regiospecific midazolam oxidation by human cytochrome P450 3A4.

Authors:  Irina F Sevrioukova; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-28       Impact factor: 11.205

5.  Ir(III)-Based Agents for Monitoring the Cytochrome P450 3A4 Active Site Occupancy.

Authors:  Madeline Denison; Sean J Steinke; Aliza Majeed; Claudia Turro; Thomas A Kocarek; Irina F Sevrioukova; Jeremy J Kodanko
Journal:  Inorg Chem       Date:  2022-08-22       Impact factor: 5.436

6.  An in vitro system for measuring genotoxicity mediated by human CYP3A4 in Saccharomyces cerevisiae.

Authors:  Michael Fasullo; Julian Freedland; Nicholas St John; Cinzia Cera; Patricia Egner; Matthew Hartog; Xinxin Ding
Journal:  Environ Mol Mutagen       Date:  2017-04-24       Impact factor: 3.216

7.  Clobetasol Propionate Is a Heme-Mediated Selective Inhibitor of Human Cytochrome P450 3A5.

Authors:  William C Wright; Jude Chenge; Jingheng Wang; Hazel M Girvan; Lei Yang; Sergio C Chai; Andrew D Huber; Jing Wu; Peter O Oladimeji; Andrew W Munro; Taosheng Chen
Journal:  J Med Chem       Date:  2020-01-22       Impact factor: 7.446

8.  Synthesis and Antileishmanial Evaluation of Arylimidamide-Azole Hybrids Containing a Phenoxyalkyl Linker.

Authors:  Ahmed Abdelhameed; Mei Feng; April C Joice; Emilia M Zywot; Yiru Jin; Chris La Rosa; Xiaoping Liao; Heidi L Meeds; Yena Kim; Junan Li; Craig A McElroy; Michael Zhuo Wang; Karl A Werbovetz
Journal:  ACS Infect Dis       Date:  2021-02-04       Impact factor: 5.578

9.  A Long-term Co-perfused Disseminated Tuberculosis-3D Liver Hollow Fiber Model for Both Drug Efficacy and Hepatotoxicity in Babies.

Authors:  Shashikant Srivastava; Jotam G Pasipanodya; Geetha Ramachandran; Devyani Deshpande; Stephen Shuford; Howland E Crosswell; Kayle N Cirrincione; Carleton M Sherman; Soumya Swaminathan; Tawanda Gumbo
Journal:  EBioMedicine       Date:  2016-02-27       Impact factor: 8.143

Review 10.  Pharmacokinetic Interaction of Rifampicin with Oral Versus Intravenous Anticancer Drugs: Challenges, Dilemmas and Paradoxical Effects Due to Multiple Mechanisms.

Authors:  Nuggehally R Srinivas
Journal:  Drugs R D       Date:  2016-06
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