Literature DB >> 26000945

PCR-free shotgun sequencing of the stone loach mitochondrial genome (Barbatula barbatula).

Jérôme Murienne1, Céline Jeziorski2,3, Hélène Holota1, Eric Coissac4, Simon Blanchet1,5, Gaël Grenouillet1.   

Abstract

The complete mitochondrial genome of the stone loach Barbatula barbatula (Linnaeus, 1758) (Actinopterygii: Cypriniformes: Nemacheilidae) has been sequenced using a genome-skimming approach on an Illumina Hiseq 2500 platform. The mitochondrial genome of B. barbatula was determined to be 16,630 bp long and presents an organization typical of vertebrate mitogenomes. The mean coverage was 82× with a minimum coverage of 33× for the control region and 52× for the remaining part of the genome. A phylogenetic analysis of the Nemacheilidae family shows the monophyly of the Barbatula genus with strong support.

Entities:  

Keywords:  Fish; genome skimming; illumina; next-generation sequencing

Mesh:

Year:  2015        PMID: 26000945     DOI: 10.3109/19401736.2015.1022744

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  2 in total

1.  Successful Recovery of Nuclear Protein-Coding Genes from Small Insects in Museums Using Illumina Sequencing.

Authors:  Kojun Kanda; James M Pflug; John S Sproul; Mark A Dasenko; David R Maddison
Journal:  PLoS One       Date:  2015-12-30       Impact factor: 3.240

2.  Complete mitochondrial genome of the river stingray Potamotrygon orbignyi (Myliobatiformes: Potamotrygonidae).

Authors:  David Ory; Yves Cuenot; Régis Vigouroux; Raphaël Covain; Sébastien Brosse; Jérôme Murienne
Journal:  Mitochondrial DNA B Resour       Date:  2019-09-20       Impact factor: 0.658

  2 in total

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