| Literature DB >> 26000271 |
Yuanzhang Li1, Robert Yolken2, David N Cowan3, Michael R Boivin1, Tianqing Liu4, David W Niebuhr5.
Abstract
Biomarkers have been examined in schizophrenia research for decades. Medical morbidity and mortality rates, as well as personal and societal costs, are associated with schizophrenia patients. The identification of biomarkers and alleles, which often have a small effect individually, may help to develop new diagnostic tests for early identification and treatment. Currently, there is not a commonly accepted statistical approach to identify predictive biomarkers from high dimensional data. We used space decomposition-gradient-regression (DGR) method to select biomarkers, which are associated with the risk of schizophrenia. Then, we used the gradient scores, generated from the selected biomarkers, as the prediction factor in regression to estimate their effects. We also used an alternative approach, classification and regression tree, to compare the biomarker selected by DGR and found about 70% of the selected biomarkers were the same. However, the advantage of DGR is that it can evaluate individual effects for each biomarker from their combined effect. In DGR analysis of serum specimens of US military service members with a diagnosis of schizophrenia from 1992 to 2005 and their controls, Alpha-1-Antitrypsin (AAT), Interleukin-6 receptor (IL-6r) and connective tissue growth factor were selected to identify schizophrenia for males; and AAT, Apolipoprotein B and Sortilin were selected for females. If these findings from military subjects are replicated by other studies, they suggest the possibility of a novel biomarker panel as an adjunct to earlier diagnosis and initiation of treatment.Entities:
Keywords: biomarker identification; gradient; high dimensional data; schizophrenia; space decomposition
Year: 2015 PMID: 26000271 PMCID: PMC4419552 DOI: 10.3389/fpubh.2015.00075
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
List of biomarkers for schizophrenia after decomposition by subspaces of observed collinearity.
| Testosterone, Total |
| Prolactin (PRL) |
| Interleukin-6 receptor (IL-6r) |
| Brain-derived neurotrophic factor (BDNF) |
| Follicle-stimulating hormone (FSH) |
| Fetuin-A |
| Apolipoprotein A-I (Apo A-I) |
| Interleukin-7 (IL-7) |
| Carcinoembryonic antigen (CEA) |
| Beta-2-Microglobulin (B2M) |
| Prostatic acid phosphatase (PAP) |
| Peptide YY (PYY) |
| Macrophage migration inhibitory factor (MIF) |
| Epidermal growth factor receptor (EGFR) |
| Serum amyloid P-component (SAP) |
| Vascular endothelial growth factor (VEGF) |
| Immunoglobulin M (IGM) |
| TNF-related apoptosis-inducing ligand |
| Receptor 3 (TRAIL-R3) |
| Interleukin-10 (IL-10) |
| Luteinizing hormone (LH) |
| Matrix Metalloproteinase-2 (MMP-2) |
| Vitronectin |
| Endothelin-1 (ET-1) |
| CD5 (CD5L) |
| Alpha-1-antitrypsin (AAT) |
| Apolipoprotein B (Apo B) |
| Macrophage-derived chemokine (MDC) |
| Cortisol (Cortisol) |
| Ferritin (FRTN) |
| Intercellular adhesion molecule 1 (ICAM-1) |
| Betacellulin (BTC) |
| Cancer antigen 125 (CA-125) |
| Monocyte chemotactic protein 2 (MCP-2) |
| Apolipoprotein H (Apo H) |
| Tumor necrosis factor receptor 2 (TNFR2) |
| Connective tissue growth factor (CTGF) |
| Sortilin |
| Kidney Injury Molecule-1 (KIM-1) |
| Macrophage Inflammatory Protein-1 alpha (MIP-1 alpha) |
| Serotransferrin (Transferrin) |
| Thyroid-stimulating hormone (TSH) |
| Apolipoprotein C-I (Apo C-I) |
| Haptoglobin |
| Tissue inhibitor of metalloproteinases 1 (TIMP-1) |
| Immunoglobulin A (IgA) |
| Apolipoprotein A-II (Apo A-II) |
| Complement C3 (C3) |
| Calbindin |
Subject and serum specimen frequencies by gender, race, and age.
| Factor | Level | Schizophrenia subjects | Serum specimens | ||
|---|---|---|---|---|---|
| Count | % | Count | % | ||
| Gender | Female | 25 | 8.5 | 65 | 12.2 |
| Male | 269 | 91.5 | 469 | 87.8 | |
| Race | Black | 90 | 30.6 | 170 | 31.8 |
| Other | 31 | 10.5 | 60 | 11.2 | |
| White | 173 | 58.8 | 304 | 56.9 | |
| Age | <25 | 191 | 65.0 | 349 | 65.4 |
| ≥25 | 103 | 35.0 | 185 | 34.6 | |
Figure 1Average sensitivity to predict schizophrenia of training group by number of biomarkers in subspaces A and B.
Figure 2Average sensitivity to predict schizophrenia of testing group by number of biomarkers in subspaces A and B.
Figure 3Quasi-likelihood information criterion in subspace A.
Figure 4Quasi-likelihood information criterion in subspace B.
The odds ratio for one SD increasing in gradient score.
| Gender | Gradient score by subspace | OR | ORL | ORU | Unadjusted | Significance by Bonferroni correction | Adjusted Wald Chi-square |
|---|---|---|---|---|---|---|---|
| Female | A | 3.88 | 2.29 | 7.03 | 2.10E–06 | Yes | 0.001 |
| B | 1.82 | 1.2 | 2.86 | 0.00728 | Yes | 0.063 | |
| Male | A | 1.5 | 1.27 | 1.77 | 2.00E–06 | Yes | 0.001 |
| B | 1.25 | 1.05 | 1.5 | 0.01305 | Yes | 0.111 | |
| Both | A | 1.79 | 1.51 | 2.15 | 7.87E–11 | Yes | 0 |
| B | 1.19 | 1.05 | 1.36 | 0.006 | Yes | 0.074 |
.
The risk of schizophrenia for selected biomarkers.
| Subspace | Male | Female | ||||||
|---|---|---|---|---|---|---|---|---|
| Biomarkers | Gradient score coefficient | Percentage contribution | Odds ratio | Biomarker | Gradient score coefficient | Percentage contribution | Odds ratio | |
| A | Alpha-1-antitrypsin (AAT) | 0.47 | 0.22 | 1.21 | Alpha-1-antitrypsin (AAT) | −0.58 | 0.34 | 0.45 |
| Apolipoprotein A-I (Apo A-I) | 0.38 | 0.14 | 1.16 | Apolipoprotein B (Apo B) | 0.48 | 0.23 | 1.92 | |
| Immunoglobulin M (IGM) | −0.33 | 0.11 | 0.87 | Cortisol (Cortisol) | −0.30 | 0.09 | 0.66 | |
| Interleukin-6 receptor (IL-6r) | −0.53 | 0.28 | 0.81 | Endothelin-1 (ET-1) | −0.33 | 0.11 | 0.64 | |
| Prolactin (PRL) | 0.36 | 0.13 | 1.16 | Fetuin-A | 0.36 | 0.13 | 1.62 | |
| Serum amyloid P-component (SAP) | 0.35 | 0.12 | 1.15 | Interleukin-10 (IL-10) | 0.32 | 0.10 | 1.54 | |
| B | Apolipoprotein H (Apo H) | −0.65 | 0.19 | 0.94 | Haptoglobin | 0.42 | 0.18 | 1.29 |
| Immunoglobulin A (IgA) | 0.51 | 0.26 | 1.12 | Sortilin | −0.73 | 0.54 | 0.64 | |
| Connective tissue growth factor (CTGF) | 0.56 | 0.54 | 1.24 | Macrophage inflammatory protein-1 alpha (MIP-1 alpha) | −0.53 | 0.34 | 0.68 | |
.
.
List of biomarkers for schizophrenia selected by subspace using decomposition-gradient-regression method (DGR) versus classification and regression tree (CART).
| Subspace | Biomarkers | |
|---|---|---|
| DGR | CART | |
| A | Alpha-1-antitrypsin (AAT) | Alpha-1-antitrypsin (AAT) |
| Apolipoprotein A-I (Apo A-I) | Brain-derived neurotrophic factor (BDNF) | |
| Epidermal growth factor receptor (EGFR) | Cancer antigen 125 (Ca-125) | |
| Ferritin (FRTN) | Carcinoembryonic antigen (Cea) | |
| Fetuin-A | Connective tissue growth factor (CTGF) | |
| Immunoglobulin M (IGM) | Cortisol (Cortisol) | |
| Interleukin-6 receptor (IL-6r) | Interleukin-6 Receptor (IL-6r) | |
| Macrophage migration inhibitory factor (MIF) | Prostatic acid phosphatase (Pap) | |
| Peptide YY (PYY) | Sortilin | |
| Prolactin (PRL) | Macrophage migration inhibitory factor (Mif) | |
| Serum amyloid P-Component (SAP) | Haptoglobin | |
| B | Apolipoprotein H (Apo H) | Immunoglobulin A (IgA) |
| Connective tissue growth factor (CTGF) | Immunoglobulin M (IGM) | |
| Haptoglobin | Prolactin (PRL) | |
| Immunoglobulin A (IgA) | Thyroid-stimulating hormone (Tsh) | |
| Macrophage inflammatory protein-1 alpha (MIP-1 alpha) | Vitronectin | |
| Sortilin | Apolipoprotein A-I (Apo A-I) | |
.