Literature DB >> 25999346

ATP-dependent motor activity of the transcription termination factor Rho from Mycobacterium tuberculosis.

François D'Heygère1, Annie Schwartz2, Franck Coste2, Bertrand Castaing3, Marc Boudvillain4.   

Abstract

The bacterial transcription termination factor Rho-a ring-shaped molecular motor displaying directional, ATP-dependent RNA helicase/translocase activity-is an interesting therapeutic target. Recently, Rho from Mycobacterium tuberculosis (MtbRho) has been proposed to operate by a mechanism uncoupled from molecular motor action, suggesting that the manner used by Rho to dissociate transcriptional complexes is not conserved throughout the bacterial kingdom. Here, however, we demonstrate that MtbRho is a bona fide molecular motor and directional helicase which requires a catalytic site competent for ATP hydrolysis to disrupt RNA duplexes or transcription elongation complexes. Moreover, we show that idiosyncratic features of the MtbRho enzyme are conferred by a large, hydrophilic insertion in its N-terminal 'RNA binding' domain and by a non-canonical R-loop residue in its C-terminal 'motor' domain. We also show that the 'motor' domain of MtbRho has a low apparent affinity for the Rho inhibitor bicyclomycin, thereby contributing to explain why M. tuberculosis is resistant to this drug. Overall, our findings support that, in spite of adjustments of the Rho motor to specific traits of its hosting bacterium, the basic principles of Rho action are conserved across species and could thus constitute pertinent screening criteria in high-throughput searches of new Rho inhibitors.
© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2015        PMID: 25999346      PMCID: PMC4499133          DOI: 10.1093/nar/gkv505

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  54 in total

1.  A simple polypyrimidine repeat acts as an artificial Rho-dependent terminator in vivo and in vitro.

Authors:  M Guérin; N Robichon; J Geiselmann; A R Rahmouni
Journal:  Nucleic Acids Res       Date:  1998-11-01       Impact factor: 16.971

Review 2.  Terminator still moving forward: expanding roles for Rho factor.

Authors:  Marc Boudvillain; Nara Figueroa-Bossi; Lionello Bossi
Journal:  Curr Opin Microbiol       Date:  2013-01-21       Impact factor: 7.934

3.  Development of a technique to determine bicyclomycin-rho binding and stoichiometry by isothermal titration calorimetry and mass spectrometry.

Authors:  Andrew P Brogan; William R Widger; Dalila Bensadek; Isabel Riba-Garcia; Simon J Gaskell; Harold Kohn
Journal:  J Am Chem Soc       Date:  2005-03-02       Impact factor: 15.419

Review 4.  The molecular basis for the mode of action of bicyclomycin.

Authors:  Harold Kohn; William Widger
Journal:  Curr Drug Targets Infect Disord       Date:  2005-09

5.  Function of the novel subdomain in the RNA binding domain of transcription termination factor Rho from Micrococcus luteus.

Authors:  W L Nowatzke; C M Burns; J P Richardson
Journal:  J Biol Chem       Date:  1997-01-24       Impact factor: 5.157

6.  Transcription termination factor Rho is essential for Micrococcus luteus.

Authors:  W L Nowatzke; E Keller; G Koch; J P Richardson
Journal:  J Bacteriol       Date:  1997-08       Impact factor: 3.490

7.  Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin.

Authors:  Emmanuel Skordalakes; Andrew P Brogan; Boon Saeng Park; Harold Kohn; James M Berger
Journal:  Structure       Date:  2005-01       Impact factor: 5.006

8.  Rho-dependent transcription termination is essential to prevent excessive genome-wide R-loops in Escherichia coli.

Authors:  J Krishna Leela; Aisha H Syeda; K Anupama; J Gowrishankar
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-18       Impact factor: 11.205

9.  The antibiotic bicyclomycin affects the secondary RNA binding site of Escherichia coli transcription termination factor Rho.

Authors:  A Magyar; X Zhang; H Kohn; W R Widger
Journal:  J Biol Chem       Date:  1996-10-11       Impact factor: 5.157

10.  Characterization of an unusual Rho factor from the high G + C gram-positive bacterium Micrococcus luteus.

Authors:  W L Nowatzke; J P Richardson
Journal:  J Biol Chem       Date:  1996-01-12       Impact factor: 5.157

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  6 in total

Review 1.  Transcription Regulation in Archaea.

Authors:  Alexandra M Gehring; Julie E Walker; Thomas J Santangelo
Journal:  J Bacteriol       Date:  2016-06-27       Impact factor: 3.490

2.  Factor-dependent archaeal transcription termination.

Authors:  Julie E Walker; Olivia Luyties; Thomas J Santangelo
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

3.  Depleting Mycobacterium tuberculosis of the transcription termination factor Rho causes pervasive transcription and rapid death.

Authors:  Laure Botella; Julien Vaubourgeix; Jonathan Livny; Dirk Schnappinger
Journal:  Nat Commun       Date:  2017-03-28       Impact factor: 14.919

4.  Cryo-EM structure of transcription termination factor Rho from Mycobacterium tuberculosis reveals bicyclomycin resistance mechanism.

Authors:  Emmanuel Saridakis; Rishi Vishwakarma; Josephine Lai-Kee-Him; Kevin Martin; Isabelle Simon; Martin Cohen-Gonsaud; Franck Coste; Patrick Bron; Emmanuel Margeat; Marc Boudvillain
Journal:  Commun Biol       Date:  2022-02-09

5.  Inhibition of Rho Activity Increases Expression of SaeRS-Dependent Virulence Factor Genes in Staphylococcus aureus, Showing a Link between Transcription Termination, Antibiotic Action, and Virulence.

Authors:  Anna Nagel; Stephan Michalik; Michel Debarbouille; Tobias Hertlein; Manuela Gesell Salazar; Hermann Rath; Tarek Msadek; Knut Ohlsen; Jan Maarten van Dijl; Uwe Völker; Ulrike Mäder
Journal:  MBio       Date:  2018-09-18       Impact factor: 7.867

6.  A multivariate prediction model for Rho-dependent termination of transcription.

Authors:  Cédric Nadiras; Eric Eveno; Annie Schwartz; Nara Figueroa-Bossi; Marc Boudvillain
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

  6 in total

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