Literature DB >> 25995944

Crystal structure of N-(4-chloro-phen-yl)benzo-thio-amide.

Ganlin Zhao1.   

Abstract

The title compound, C13H10ClNS, exhibits a trans conformation with regard to the axis of the C-N bond. The benzene and phenyl rings are inclined to one another by 85.06 (8)°. In the crystal, mol-ecules are linked by N-H⋯S=C hydrogen bonds, forming chains along [001].

Entities:  

Keywords:  N—H⋯S hydrogen bonding.; benzo­thio­amide; crystal structure

Year:  2015        PMID: 25995944      PMCID: PMC4420071          DOI: 10.1107/S2056989015008075

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For hydrogen bonding of amides, see: Taylor et al. (1984 ▸); Leiserowitz & Schmidt (1969 ▸). For the preparation and for the use of thio­amides as inter­mediates in chemical transformations, see: Li et al. (2012 ▸, 2015 ▸). For related structures, see: Omondi et al. (2012 ▸); Nagasawa et al. (2014 ▸).

Experimental

Crystal data

C13H10ClNS M = 247.73 Monoclinic, a = 11.943 (2) Å b = 12.689 (3) Å c = 7.9764 (16) Å β = 109.30 (3)° V = 1140.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.49 mm−1 T = 113 K 0.22 × 0.20 × 0.12 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▸) T min = 0.901, T max = 0.944 7517 measured reflections 2010 independent reflections 1701 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.077 S = 1.05 2010 reflections 150 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.18 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2005 ▸); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015008075/su5123sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008075/su5123Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015008075/su5123Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015008075/su5123fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015008075/su5123fig2.tif A view along the b axis of the crystal packing of the title compound. The N—H⋯S hydrogen bonds are shown as dashed lines (see Table 1 for details). CCDC reference: 1061304 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H10ClNSF(000) = 512
Mr = 247.73Dx = 1.442 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3499 reflections
a = 11.943 (2) Åθ = 1.8–27.9°
b = 12.689 (3) ŵ = 0.49 mm1
c = 7.9764 (16) ÅT = 113 K
β = 109.30 (3)°Block, yellow
V = 1140.9 (4) Å30.22 × 0.20 × 0.12 mm
Z = 4
Rigaku Saturn CCD area-detector diffractometer2010 independent reflections
Radiation source: rotating anode1701 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.030
Detector resolution: 7.31 pixels mm-1θmax = 25.0°, θmin = 2.4°
ω and φ scansh = −11→14
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −15→15
Tmin = 0.901, Tmax = 0.944l = −9→9
7517 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.077w = 1/[σ2(Fo2) + (0.0477P)2 + 0.1743P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.002
2010 reflectionsΔρmax = 0.22 e Å3
150 parametersΔρmin = −0.18 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.050 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.94504 (4)0.58973 (3)1.20150 (5)0.01919 (16)
Cl11.47747 (4)0.84240 (4)1.54329 (6)0.02760 (17)
N11.02619 (11)0.71403 (10)0.99722 (17)0.0160 (3)
C11.13474 (13)0.74209 (12)1.1311 (2)0.0159 (3)
C21.21244 (14)0.66609 (13)1.2321 (2)0.0201 (4)
H21.19360.59491.21470.024*
C31.31777 (14)0.69722 (13)1.3583 (2)0.0218 (4)
H31.36980.64701.42640.026*
C41.34551 (14)0.80302 (13)1.3828 (2)0.0186 (4)
C51.26984 (15)0.87901 (13)1.2816 (2)0.0219 (4)
H51.28950.95011.29820.026*
C61.16448 (15)0.84782 (13)1.1550 (2)0.0194 (4)
H61.11340.89821.08570.023*
C70.94159 (14)0.64895 (12)1.0128 (2)0.0159 (4)
C80.83987 (14)0.63239 (12)0.8467 (2)0.0161 (4)
C90.85648 (15)0.62942 (12)0.6821 (2)0.0182 (4)
H90.93200.63890.67510.022*
C100.76076 (16)0.61237 (13)0.5280 (2)0.0226 (4)
H100.77250.61060.41840.027*
C110.64826 (16)0.59810 (13)0.5376 (2)0.0249 (4)
H110.58420.58680.43470.030*
C120.63130 (15)0.60079 (13)0.7015 (2)0.0251 (4)
H120.55570.59100.70820.030*
C130.72593 (14)0.61784 (12)0.8545 (2)0.0201 (4)
H130.71370.61970.96370.024*
H11.0058 (16)0.7552 (13)0.9013 (17)0.030 (5)*
U11U22U33U12U13U23
S10.0205 (2)0.0192 (2)0.0179 (3)−0.00251 (17)0.00650 (18)0.00248 (16)
Cl10.0174 (2)0.0353 (3)0.0268 (3)−0.00442 (18)0.00281 (18)−0.00048 (18)
N10.0177 (7)0.0151 (7)0.0155 (7)−0.0010 (6)0.0057 (6)0.0010 (6)
C10.0158 (8)0.0181 (8)0.0164 (8)−0.0003 (7)0.0090 (7)−0.0010 (6)
C20.0187 (9)0.0154 (8)0.0280 (9)0.0004 (7)0.0102 (7)0.0010 (7)
C30.0170 (8)0.0215 (9)0.0279 (10)0.0042 (7)0.0089 (7)0.0066 (7)
C40.0138 (8)0.0245 (9)0.0186 (8)−0.0014 (7)0.0070 (7)−0.0008 (7)
C50.0231 (9)0.0177 (8)0.0249 (9)−0.0026 (7)0.0081 (8)−0.0024 (7)
C60.0192 (9)0.0175 (8)0.0211 (9)0.0029 (7)0.0063 (7)0.0016 (6)
C70.0173 (8)0.0118 (7)0.0210 (9)0.0028 (6)0.0096 (7)−0.0021 (6)
C80.0186 (8)0.0098 (7)0.0201 (8)0.0007 (6)0.0065 (7)−0.0005 (6)
C90.0202 (9)0.0133 (8)0.0223 (9)−0.0018 (7)0.0085 (7)0.0000 (7)
C100.0300 (10)0.0194 (8)0.0186 (9)−0.0017 (8)0.0081 (8)−0.0018 (7)
C110.0234 (9)0.0257 (9)0.0202 (9)−0.0010 (8)0.0001 (7)−0.0017 (7)
C120.0171 (9)0.0280 (9)0.0285 (10)0.0010 (8)0.0052 (7)0.0009 (8)
C130.0192 (9)0.0210 (9)0.0212 (9)0.0019 (7)0.0080 (7)0.0011 (7)
S1—C71.6705 (16)C6—H60.9300
Cl1—C41.7430 (17)C7—C81.487 (2)
N1—C71.342 (2)C8—C91.391 (2)
N1—C11.426 (2)C8—C131.395 (2)
N1—H10.891 (9)C9—C101.392 (2)
C1—C61.385 (2)C9—H90.9300
C1—C21.395 (2)C10—C111.383 (2)
C2—C31.384 (2)C10—H100.9300
C2—H20.9300C11—C121.388 (3)
C3—C41.381 (2)C11—H110.9300
C3—H30.9300C12—C131.379 (2)
C4—C51.384 (2)C12—H120.9300
C5—C61.385 (2)C13—H130.9300
C5—H50.9300
C7—N1—C1127.60 (13)N1—C7—C8115.00 (13)
C7—N1—H1116.1 (12)N1—C7—S1124.40 (13)
C1—N1—H1114.8 (12)C8—C7—S1120.59 (12)
C6—C1—C2119.92 (15)C9—C8—C13118.95 (15)
C6—C1—N1118.25 (14)C9—C8—C7121.01 (15)
C2—C1—N1121.77 (14)C13—C8—C7120.03 (15)
C3—C2—C1119.60 (15)C8—C9—C10120.42 (16)
C3—C2—H2120.2C8—C9—H9119.8
C1—C2—H2120.2C10—C9—H9119.8
C4—C3—C2119.90 (15)C11—C10—C9120.03 (16)
C4—C3—H3120.0C11—C10—H10120.0
C2—C3—H3120.0C9—C10—H10120.0
C3—C4—C5120.96 (15)C10—C11—C12119.76 (16)
C3—C4—Cl1119.94 (13)C10—C11—H11120.1
C5—C4—Cl1119.09 (13)C12—C11—H11120.1
C4—C5—C6119.13 (15)C13—C12—C11120.34 (16)
C4—C5—H5120.4C13—C12—H12119.8
C6—C5—H5120.4C11—C12—H12119.8
C1—C6—C5120.46 (15)C12—C13—C8120.50 (16)
C1—C6—H6119.8C12—C13—H13119.7
C5—C6—H6119.8C8—C13—H13119.7
C7—N1—C1—C6−131.37 (16)C1—N1—C7—S12.6 (2)
C7—N1—C1—C251.1 (2)N1—C7—C8—C935.2 (2)
C6—C1—C2—C31.3 (2)S1—C7—C8—C9−145.34 (13)
N1—C1—C2—C3178.80 (14)N1—C7—C8—C13−145.86 (15)
C1—C2—C3—C4−0.3 (2)S1—C7—C8—C1333.62 (19)
C2—C3—C4—C5−0.7 (2)C13—C8—C9—C100.1 (2)
C2—C3—C4—Cl1179.35 (12)C7—C8—C9—C10179.08 (14)
C3—C4—C5—C60.5 (2)C8—C9—C10—C11−0.1 (2)
Cl1—C4—C5—C6−179.46 (12)C9—C10—C11—C120.0 (2)
C2—C1—C6—C5−1.5 (2)C10—C11—C12—C130.2 (3)
N1—C1—C6—C5−179.01 (14)C11—C12—C13—C8−0.1 (2)
C4—C5—C6—C10.5 (2)C9—C8—C13—C120.0 (2)
C1—N1—C7—C8−177.96 (13)C7—C8—C13—C12−178.98 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.89 (1)2.49 (1)3.346 (15)163 (1)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1S1i 0.89(1)2.49(1)3.346(15)163(1)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(2,6-Diisopropyl-phen-yl)thio-amide.

Authors:  Bernard Omondi; Demetrius C Levendis
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-01

3.  N,N'-(Propane-1,3-di-yl)dibenzo-thio-amide.

Authors:  Masayuki Nagasawa; Yuji Sasanuma; Hyuma Masu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-03
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