Literature DB >> 25995943

Crystal structure of 1,1'-{(dodecane-1,12-di-yl)bis-[(aza-niumylyl-idene)methanylyl-idene]}bis-(naphthalen-2-olate).

Kamel Ouari1, Moufida Merzougui1, Sabrina Bendia1, Corinne Bailly2.   

Abstract

The title compound, C34H40N2O2, exists in an extended conformation and has crystallographically imposed centrosymmetry. The crystal packing can be described as being composed of parallel layers stacked along [010]. The zwitterionic structure is stabilized by an intra-molecular N-H⋯O hydrogen-bond inter-action.

Entities:  

Keywords:  1,12-di­amino­dodeca­ne; 2-hy­droxy-1-naphthaldehyde; crystal structure; hydrogen bonds

Year:  2015        PMID: 25995943      PMCID: PMC4420129          DOI: 10.1107/S2056989015007938

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

The compound is synthesized using two procedures, the ultrasound and the conventional methods. We found that the ultrasound irradiation method is more convenient and efficient. For conventional synthesis of similar compounds, see: Ouari et al. (2015a ▸); Mohammadi & Rastegari (2012 ▸); Bhowmik et al. (2011 ▸). For ultrasonic synthesis of similar compounds, see: Rayati & Abdolalian (2013 ▸); Khan et al. (2014 ▸); Kanagarajan et al. (2011 ▸). For related crystal structures, see: Ouari et al. (2010 ▸, 2015b ▸); Popović et al. (2001 ▸); Friscic et al. (1998 ▸); Bi et al. (2012 ▸); Temel et al. (2010 ▸). For their applications, see: Köse et al. (2015 ▸); Grivani et al. (2013 ▸); Amin et al. (2010 ▸); Panneerselvam et al. (2009 ▸); Nasr et al. (2009 ▸); Nejo et al. (2009 ▸); Taha et al. (2012 ▸).

Experimental

Crystal data

C34H40N2O2 M = 508.68 Monoclinic, a = 54.400 (5) Å b = 4.7465 (4) Å c = 10.7022 (9) Å β = 96.318 (2)° V = 2746.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.50 × 0.14 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.682, T max = 0.746 17506 measured reflections 3271 independent reflections 2313 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.125 S = 1.04 3271 reflections 176 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAIn class="Chemical">NT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015007938/mw2131sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007938/mw2131Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015007938/mw2131fig1.tif The title compound with atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small spheres of arbitrary radius. Click here for additional data file. c . DOI: 10.1107/S2056989015007938/mw2131fig2.tif Crystal packing of the title compound viewed along the c axis. CCDC reference: 1032833 Additional supporting information: crystallographic information; 3D view; checkCIF report
C34H40N2O2F(000) = 1096
Mr = 508.68Dx = 1.230 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 54.400 (5) ÅCell parameters from 3931 reflections
b = 4.7465 (4) Åθ = 3.0–27.8°
c = 10.7022 (9) ŵ = 0.08 mm1
β = 96.318 (2)°T = 173 K
V = 2746.6 (4) Å3Prism, yellow
Z = 40.50 × 0.14 × 0.06 mm
Bruker APEXII CCD diffractometer3271 independent reflections
Radiation source: sealed tube2313 reflections with I > 2σ(I)
Triumph monochromatorRint = 0.036
φ and ω scansθmax = 27.9°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −70→70
Tmin = 0.682, Tmax = 0.746k = −6→5
17506 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: mixed
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0503P)2 + 2.2119P] where P = (Fo2 + 2Fc2)/3
3271 reflections(Δ/σ)max < 0.001
176 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.11107 (3)−0.3639 (3)1.08101 (14)0.0273 (3)
C20.09446 (3)−0.5389 (3)1.14296 (15)0.0345 (4)
H20.1011−0.66821.20560.041*
C30.06975 (3)−0.5229 (4)1.11383 (17)0.0386 (4)
H30.0594−0.64131.15700.046*
C40.05853 (3)−0.3340 (4)1.02027 (16)0.0329 (4)
C50.03264 (3)−0.3230 (4)0.99173 (19)0.0448 (5)
H50.0225−0.44131.03620.054*
C60.02183 (3)−0.1460 (5)0.90169 (19)0.0478 (5)
H60.0043−0.14100.88330.057*
C70.03675 (3)0.0275 (4)0.83679 (19)0.0434 (4)
H70.02930.15100.77370.052*
C80.06204 (3)0.0223 (4)0.86294 (16)0.0357 (4)
H80.07180.14280.81750.043*
C90.07384 (3)−0.1580 (3)0.95574 (14)0.0267 (3)
C100.10041 (3)−0.1712 (3)0.98713 (13)0.0248 (3)
C110.11636 (3)0.0138 (3)0.93099 (14)0.0261 (3)
H110.10920.14680.87140.031*
C120.15676 (3)0.2039 (3)0.90007 (15)0.0287 (3)
H12A0.16680.30920.96730.034*
H12B0.14680.34190.84670.034*
C130.17384 (3)0.0464 (3)0.82076 (15)0.0280 (3)
H13A0.1638−0.05940.75370.034*
H13B0.1838−0.09120.87430.034*
C140.19108 (3)0.2470 (3)0.76130 (15)0.0284 (3)
H14A0.20130.34920.82880.034*
H14B0.18100.38790.71020.034*
C150.20806 (3)0.0982 (3)0.67812 (14)0.0282 (3)
H15A0.2186−0.03700.73010.034*
H15B0.1978−0.01080.61290.034*
C160.22456 (3)0.2977 (3)0.61412 (14)0.0289 (3)
H16A0.23460.40900.67930.035*
H16B0.21400.43080.56110.035*
C170.24187 (3)0.1500 (3)0.53257 (14)0.0292 (3)
H17A0.25260.01860.58580.035*
H17B0.23190.03690.46800.035*
N10.14027 (2)0.0119 (3)0.95644 (12)0.0288 (3)
O10.13443 (2)−0.3838 (3)1.11158 (11)0.0359 (3)
H1N0.1458 (4)−0.130 (5)1.014 (2)0.065 (7)*
U11U22U33U12U13U23
C10.0341 (8)0.0276 (7)0.0212 (7)−0.0011 (6)0.0076 (6)−0.0064 (6)
C20.0435 (10)0.0325 (8)0.0281 (8)−0.0035 (7)0.0066 (7)0.0023 (7)
C30.0423 (10)0.0389 (9)0.0367 (9)−0.0129 (8)0.0131 (8)0.0029 (8)
C40.0314 (8)0.0353 (9)0.0335 (9)−0.0074 (7)0.0105 (7)−0.0075 (7)
C50.0312 (9)0.0536 (11)0.0510 (12)−0.0139 (8)0.0115 (8)−0.0061 (9)
C60.0245 (9)0.0620 (13)0.0568 (12)−0.0024 (8)0.0033 (8)−0.0112 (10)
C70.0336 (9)0.0506 (11)0.0449 (11)0.0052 (8)−0.0008 (8)−0.0043 (9)
C80.0300 (9)0.0396 (9)0.0377 (9)−0.0007 (7)0.0048 (7)0.0002 (7)
C90.0273 (8)0.0277 (8)0.0262 (7)−0.0021 (6)0.0075 (6)−0.0076 (6)
C100.0271 (8)0.0262 (7)0.0221 (7)−0.0016 (6)0.0077 (6)−0.0050 (6)
C110.0281 (8)0.0282 (7)0.0231 (7)0.0020 (6)0.0073 (6)−0.0030 (6)
C120.0267 (8)0.0326 (8)0.0286 (8)−0.0028 (6)0.0107 (6)−0.0011 (6)
C130.0259 (8)0.0324 (8)0.0271 (8)0.0001 (6)0.0097 (6)−0.0008 (6)
C140.0233 (7)0.0346 (8)0.0286 (8)0.0003 (6)0.0087 (6)−0.0003 (6)
C150.0265 (7)0.0341 (8)0.0253 (8)0.0002 (6)0.0092 (6)−0.0001 (6)
C160.0256 (8)0.0366 (8)0.0259 (8)0.0003 (6)0.0093 (6)−0.0023 (6)
C170.0270 (8)0.0354 (8)0.0267 (8)0.0002 (6)0.0096 (6)−0.0008 (6)
N10.0259 (7)0.0345 (7)0.0275 (7)−0.0004 (6)0.0096 (5)0.0016 (6)
O10.0323 (6)0.0435 (7)0.0317 (6)0.0024 (5)0.0026 (5)0.0042 (5)
C1—O11.2802 (19)C12—N11.4553 (19)
C1—C101.433 (2)C12—C131.522 (2)
C1—C21.442 (2)C12—H12A0.9900
C2—C31.348 (2)C12—H12B0.9900
C2—H20.9500C13—C141.524 (2)
C3—C41.430 (2)C13—H13A0.9900
C3—H30.9500C13—H13B0.9900
C4—C51.409 (2)C14—C151.525 (2)
C4—C91.413 (2)C14—H14A0.9900
C5—C61.362 (3)C14—H14B0.9900
C5—H50.9500C15—C161.518 (2)
C6—C71.394 (3)C15—H15A0.9900
C6—H60.9500C15—H15B0.9900
C7—C81.374 (2)C16—C171.5232 (19)
C7—H70.9500C16—H16A0.9900
C8—C91.411 (2)C16—H16B0.9900
C8—H80.9500C17—C17i1.518 (3)
C9—C101.449 (2)C17—H17A0.9900
C10—C111.414 (2)C17—H17B0.9900
C11—N11.2994 (19)N1—H1N0.94 (2)
C11—H110.9500
O1—C1—C10122.68 (14)N1—C12—H12B109.3
O1—C1—C2119.65 (15)C13—C12—H12B109.3
C10—C1—C2117.67 (14)H12A—C12—H12B108.0
C3—C2—C1121.38 (16)C12—C13—C14111.58 (13)
C3—C2—H2119.3C12—C13—H13A109.3
C1—C2—H2119.3C14—C13—H13A109.3
C2—C3—C4122.38 (15)C12—C13—H13B109.3
C2—C3—H3118.8C14—C13—H13B109.3
C4—C3—H3118.8H13A—C13—H13B108.0
C5—C4—C9120.10 (17)C13—C14—C15113.24 (13)
C5—C4—C3120.99 (16)C13—C14—H14A108.9
C9—C4—C3118.92 (15)C15—C14—H14A108.9
C6—C5—C4121.31 (17)C13—C14—H14B108.9
C6—C5—H5119.3C15—C14—H14B108.9
C4—C5—H5119.3H14A—C14—H14B107.7
C5—C6—C7119.16 (17)C16—C15—C14113.62 (13)
C5—C6—H6120.4C16—C15—H15A108.8
C7—C6—H6120.4C14—C15—H15A108.8
C8—C7—C6120.85 (18)C16—C15—H15B108.8
C8—C7—H7119.6C14—C15—H15B108.8
C6—C7—H7119.6H15A—C15—H15B107.7
C7—C8—C9121.47 (17)C15—C16—C17113.89 (13)
C7—C8—H8119.3C15—C16—H16A108.8
C9—C8—H8119.3C17—C16—H16A108.8
C8—C9—C4117.11 (14)C15—C16—H16B108.8
C8—C9—C10123.66 (14)C17—C16—H16B108.8
C4—C9—C10119.23 (14)H16A—C16—H16B107.7
C11—C10—C1118.31 (14)C17i—C17—C16113.82 (17)
C11—C10—C9121.19 (14)C17i—C17—H17A108.8
C1—C10—C9120.43 (13)C16—C17—H17A108.8
N1—C11—C10123.61 (15)C17i—C17—H17B108.8
N1—C11—H11118.2C16—C17—H17B108.8
C10—C11—H11118.2H17A—C17—H17B107.7
N1—C12—C13111.46 (13)C11—N1—C12123.87 (14)
N1—C12—H12A109.3C11—N1—H1N112.7 (13)
C13—C12—H12A109.3C12—N1—H1N123.4 (13)
O1—C1—C2—C3179.64 (16)C2—C1—C10—C11176.23 (13)
C10—C1—C2—C30.1 (2)O1—C1—C10—C9179.73 (14)
C1—C2—C3—C40.2 (3)C2—C1—C10—C9−0.7 (2)
C2—C3—C4—C5179.79 (17)C8—C9—C10—C114.3 (2)
C2—C3—C4—C90.1 (2)C4—C9—C10—C11−175.79 (13)
C9—C4—C5—C60.5 (3)C8—C9—C10—C1−178.81 (14)
C3—C4—C5—C6−179.20 (17)C4—C9—C10—C11.1 (2)
C4—C5—C6—C7−0.1 (3)C1—C10—C11—N12.6 (2)
C5—C6—C7—C8−0.2 (3)C9—C10—C11—N1179.54 (14)
C6—C7—C8—C90.1 (3)N1—C12—C13—C14179.84 (13)
C7—C8—C9—C40.3 (2)C12—C13—C14—C15−178.46 (13)
C7—C8—C9—C10−179.84 (16)C13—C14—C15—C16177.58 (14)
C5—C4—C9—C8−0.5 (2)C14—C15—C16—C17179.05 (13)
C3—C4—C9—C8179.13 (15)C15—C16—C17—C17i179.32 (17)
C5—C4—C9—C10179.57 (15)C10—C11—N1—C12−179.25 (14)
C3—C4—C9—C10−0.8 (2)C13—C12—N1—C11−116.21 (16)
O1—C1—C10—C11−3.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O10.94 (2)1.75 (2)2.5498 (18)140.6 (19)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NO10.94(2)1.75(2)2.5498(18)140.6(19)
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