| Literature DB >> 25995943 |
Kamel Ouari1, Moufida Merzougui1, Sabrina Bendia1, Corinne Bailly2.
Abstract
The title compound, C34H40N2O2, exists in an extended conformation and has crystallographically imposed centrosymmetry. The crystal packing can be described as being composed of parallel layers stacked along [010]. The zwitterionic structure is stabilized by an intra-molecular N-H⋯O hydrogen-bond inter-action.Entities:
Keywords: 1,12-diaminododecane; 2-hydroxy-1-naphthaldehyde; crystal structure; hydrogen bonds
Year: 2015 PMID: 25995943 PMCID: PMC4420129 DOI: 10.1107/S2056989015007938
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C34H40N2O2 | |
| Monoclinic, | Mo |
| Cell parameters from 3931 reflections | |
| θ = 3.0–27.8° | |
| µ = 0.08 mm−1 | |
| β = 96.318 (2)° | |
| Prism, yellow | |
| 0.50 × 0.14 × 0.06 mm |
| Bruker APEXII CCD diffractometer | 3271 independent reflections |
| Radiation source: sealed tube | 2313 reflections with |
| Triumph monochromator | |
| φ and ω scans | θmax = 27.9°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 17506 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3271 reflections | (Δ/σ)max < 0.001 |
| 176 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| C1 | 0.11107 (3) | −0.3639 (3) | 1.08101 (14) | 0.0273 (3) | |
| C2 | 0.09446 (3) | −0.5389 (3) | 1.14296 (15) | 0.0345 (4) | |
| H2 | 0.1011 | −0.6682 | 1.2056 | 0.041* | |
| C3 | 0.06975 (3) | −0.5229 (4) | 1.11383 (17) | 0.0386 (4) | |
| H3 | 0.0594 | −0.6413 | 1.1570 | 0.046* | |
| C4 | 0.05853 (3) | −0.3340 (4) | 1.02027 (16) | 0.0329 (4) | |
| C5 | 0.03264 (3) | −0.3230 (4) | 0.99173 (19) | 0.0448 (5) | |
| H5 | 0.0225 | −0.4413 | 1.0362 | 0.054* | |
| C6 | 0.02183 (3) | −0.1460 (5) | 0.90169 (19) | 0.0478 (5) | |
| H6 | 0.0043 | −0.1410 | 0.8833 | 0.057* | |
| C7 | 0.03675 (3) | 0.0275 (4) | 0.83679 (19) | 0.0434 (4) | |
| H7 | 0.0293 | 0.1510 | 0.7737 | 0.052* | |
| C8 | 0.06204 (3) | 0.0223 (4) | 0.86294 (16) | 0.0357 (4) | |
| H8 | 0.0718 | 0.1428 | 0.8175 | 0.043* | |
| C9 | 0.07384 (3) | −0.1580 (3) | 0.95574 (14) | 0.0267 (3) | |
| C10 | 0.10041 (3) | −0.1712 (3) | 0.98713 (13) | 0.0248 (3) | |
| C11 | 0.11636 (3) | 0.0138 (3) | 0.93099 (14) | 0.0261 (3) | |
| H11 | 0.1092 | 0.1468 | 0.8714 | 0.031* | |
| C12 | 0.15676 (3) | 0.2039 (3) | 0.90007 (15) | 0.0287 (3) | |
| H12A | 0.1668 | 0.3092 | 0.9673 | 0.034* | |
| H12B | 0.1468 | 0.3419 | 0.8467 | 0.034* | |
| C13 | 0.17384 (3) | 0.0464 (3) | 0.82076 (15) | 0.0280 (3) | |
| H13A | 0.1638 | −0.0594 | 0.7537 | 0.034* | |
| H13B | 0.1838 | −0.0912 | 0.8743 | 0.034* | |
| C14 | 0.19108 (3) | 0.2470 (3) | 0.76130 (15) | 0.0284 (3) | |
| H14A | 0.2013 | 0.3492 | 0.8288 | 0.034* | |
| H14B | 0.1810 | 0.3879 | 0.7102 | 0.034* | |
| C15 | 0.20806 (3) | 0.0982 (3) | 0.67812 (14) | 0.0282 (3) | |
| H15A | 0.2186 | −0.0370 | 0.7301 | 0.034* | |
| H15B | 0.1978 | −0.0108 | 0.6129 | 0.034* | |
| C16 | 0.22456 (3) | 0.2977 (3) | 0.61412 (14) | 0.0289 (3) | |
| H16A | 0.2346 | 0.4090 | 0.6793 | 0.035* | |
| H16B | 0.2140 | 0.4308 | 0.5611 | 0.035* | |
| C17 | 0.24187 (3) | 0.1500 (3) | 0.53257 (14) | 0.0292 (3) | |
| H17A | 0.2526 | 0.0186 | 0.5858 | 0.035* | |
| H17B | 0.2319 | 0.0369 | 0.4680 | 0.035* | |
| N1 | 0.14027 (2) | 0.0119 (3) | 0.95644 (12) | 0.0288 (3) | |
| O1 | 0.13443 (2) | −0.3838 (3) | 1.11158 (11) | 0.0359 (3) | |
| H1N | 0.1458 (4) | −0.130 (5) | 1.014 (2) | 0.065 (7)* |
| C1 | 0.0341 (8) | 0.0276 (7) | 0.0212 (7) | −0.0011 (6) | 0.0076 (6) | −0.0064 (6) |
| C2 | 0.0435 (10) | 0.0325 (8) | 0.0281 (8) | −0.0035 (7) | 0.0066 (7) | 0.0023 (7) |
| C3 | 0.0423 (10) | 0.0389 (9) | 0.0367 (9) | −0.0129 (8) | 0.0131 (8) | 0.0029 (8) |
| C4 | 0.0314 (8) | 0.0353 (9) | 0.0335 (9) | −0.0074 (7) | 0.0105 (7) | −0.0075 (7) |
| C5 | 0.0312 (9) | 0.0536 (11) | 0.0510 (12) | −0.0139 (8) | 0.0115 (8) | −0.0061 (9) |
| C6 | 0.0245 (9) | 0.0620 (13) | 0.0568 (12) | −0.0024 (8) | 0.0033 (8) | −0.0112 (10) |
| C7 | 0.0336 (9) | 0.0506 (11) | 0.0449 (11) | 0.0052 (8) | −0.0008 (8) | −0.0043 (9) |
| C8 | 0.0300 (9) | 0.0396 (9) | 0.0377 (9) | −0.0007 (7) | 0.0048 (7) | 0.0002 (7) |
| C9 | 0.0273 (8) | 0.0277 (8) | 0.0262 (7) | −0.0021 (6) | 0.0075 (6) | −0.0076 (6) |
| C10 | 0.0271 (8) | 0.0262 (7) | 0.0221 (7) | −0.0016 (6) | 0.0077 (6) | −0.0050 (6) |
| C11 | 0.0281 (8) | 0.0282 (7) | 0.0231 (7) | 0.0020 (6) | 0.0073 (6) | −0.0030 (6) |
| C12 | 0.0267 (8) | 0.0326 (8) | 0.0286 (8) | −0.0028 (6) | 0.0107 (6) | −0.0011 (6) |
| C13 | 0.0259 (8) | 0.0324 (8) | 0.0271 (8) | 0.0001 (6) | 0.0097 (6) | −0.0008 (6) |
| C14 | 0.0233 (7) | 0.0346 (8) | 0.0286 (8) | 0.0003 (6) | 0.0087 (6) | −0.0003 (6) |
| C15 | 0.0265 (7) | 0.0341 (8) | 0.0253 (8) | 0.0002 (6) | 0.0092 (6) | −0.0001 (6) |
| C16 | 0.0256 (8) | 0.0366 (8) | 0.0259 (8) | 0.0003 (6) | 0.0093 (6) | −0.0023 (6) |
| C17 | 0.0270 (8) | 0.0354 (8) | 0.0267 (8) | 0.0002 (6) | 0.0096 (6) | −0.0008 (6) |
| N1 | 0.0259 (7) | 0.0345 (7) | 0.0275 (7) | −0.0004 (6) | 0.0096 (5) | 0.0016 (6) |
| O1 | 0.0323 (6) | 0.0435 (7) | 0.0317 (6) | 0.0024 (5) | 0.0026 (5) | 0.0042 (5) |
| C1—O1 | 1.2802 (19) | C12—N1 | 1.4553 (19) |
| C1—C10 | 1.433 (2) | C12—C13 | 1.522 (2) |
| C1—C2 | 1.442 (2) | C12—H12A | 0.9900 |
| C2—C3 | 1.348 (2) | C12—H12B | 0.9900 |
| C2—H2 | 0.9500 | C13—C14 | 1.524 (2) |
| C3—C4 | 1.430 (2) | C13—H13A | 0.9900 |
| C3—H3 | 0.9500 | C13—H13B | 0.9900 |
| C4—C5 | 1.409 (2) | C14—C15 | 1.525 (2) |
| C4—C9 | 1.413 (2) | C14—H14A | 0.9900 |
| C5—C6 | 1.362 (3) | C14—H14B | 0.9900 |
| C5—H5 | 0.9500 | C15—C16 | 1.518 (2) |
| C6—C7 | 1.394 (3) | C15—H15A | 0.9900 |
| C6—H6 | 0.9500 | C15—H15B | 0.9900 |
| C7—C8 | 1.374 (2) | C16—C17 | 1.5232 (19) |
| C7—H7 | 0.9500 | C16—H16A | 0.9900 |
| C8—C9 | 1.411 (2) | C16—H16B | 0.9900 |
| C8—H8 | 0.9500 | C17—C17i | 1.518 (3) |
| C9—C10 | 1.449 (2) | C17—H17A | 0.9900 |
| C10—C11 | 1.414 (2) | C17—H17B | 0.9900 |
| C11—N1 | 1.2994 (19) | N1—H1N | 0.94 (2) |
| C11—H11 | 0.9500 | ||
| O1—C1—C10 | 122.68 (14) | N1—C12—H12B | 109.3 |
| O1—C1—C2 | 119.65 (15) | C13—C12—H12B | 109.3 |
| C10—C1—C2 | 117.67 (14) | H12A—C12—H12B | 108.0 |
| C3—C2—C1 | 121.38 (16) | C12—C13—C14 | 111.58 (13) |
| C3—C2—H2 | 119.3 | C12—C13—H13A | 109.3 |
| C1—C2—H2 | 119.3 | C14—C13—H13A | 109.3 |
| C2—C3—C4 | 122.38 (15) | C12—C13—H13B | 109.3 |
| C2—C3—H3 | 118.8 | C14—C13—H13B | 109.3 |
| C4—C3—H3 | 118.8 | H13A—C13—H13B | 108.0 |
| C5—C4—C9 | 120.10 (17) | C13—C14—C15 | 113.24 (13) |
| C5—C4—C3 | 120.99 (16) | C13—C14—H14A | 108.9 |
| C9—C4—C3 | 118.92 (15) | C15—C14—H14A | 108.9 |
| C6—C5—C4 | 121.31 (17) | C13—C14—H14B | 108.9 |
| C6—C5—H5 | 119.3 | C15—C14—H14B | 108.9 |
| C4—C5—H5 | 119.3 | H14A—C14—H14B | 107.7 |
| C5—C6—C7 | 119.16 (17) | C16—C15—C14 | 113.62 (13) |
| C5—C6—H6 | 120.4 | C16—C15—H15A | 108.8 |
| C7—C6—H6 | 120.4 | C14—C15—H15A | 108.8 |
| C8—C7—C6 | 120.85 (18) | C16—C15—H15B | 108.8 |
| C8—C7—H7 | 119.6 | C14—C15—H15B | 108.8 |
| C6—C7—H7 | 119.6 | H15A—C15—H15B | 107.7 |
| C7—C8—C9 | 121.47 (17) | C15—C16—C17 | 113.89 (13) |
| C7—C8—H8 | 119.3 | C15—C16—H16A | 108.8 |
| C9—C8—H8 | 119.3 | C17—C16—H16A | 108.8 |
| C8—C9—C4 | 117.11 (14) | C15—C16—H16B | 108.8 |
| C8—C9—C10 | 123.66 (14) | C17—C16—H16B | 108.8 |
| C4—C9—C10 | 119.23 (14) | H16A—C16—H16B | 107.7 |
| C11—C10—C1 | 118.31 (14) | C17i—C17—C16 | 113.82 (17) |
| C11—C10—C9 | 121.19 (14) | C17i—C17—H17A | 108.8 |
| C1—C10—C9 | 120.43 (13) | C16—C17—H17A | 108.8 |
| N1—C11—C10 | 123.61 (15) | C17i—C17—H17B | 108.8 |
| N1—C11—H11 | 118.2 | C16—C17—H17B | 108.8 |
| C10—C11—H11 | 118.2 | H17A—C17—H17B | 107.7 |
| N1—C12—C13 | 111.46 (13) | C11—N1—C12 | 123.87 (14) |
| N1—C12—H12A | 109.3 | C11—N1—H1N | 112.7 (13) |
| C13—C12—H12A | 109.3 | C12—N1—H1N | 123.4 (13) |
| O1—C1—C2—C3 | 179.64 (16) | C2—C1—C10—C11 | 176.23 (13) |
| C10—C1—C2—C3 | 0.1 (2) | O1—C1—C10—C9 | 179.73 (14) |
| C1—C2—C3—C4 | 0.2 (3) | C2—C1—C10—C9 | −0.7 (2) |
| C2—C3—C4—C5 | 179.79 (17) | C8—C9—C10—C11 | 4.3 (2) |
| C2—C3—C4—C9 | 0.1 (2) | C4—C9—C10—C11 | −175.79 (13) |
| C9—C4—C5—C6 | 0.5 (3) | C8—C9—C10—C1 | −178.81 (14) |
| C3—C4—C5—C6 | −179.20 (17) | C4—C9—C10—C1 | 1.1 (2) |
| C4—C5—C6—C7 | −0.1 (3) | C1—C10—C11—N1 | 2.6 (2) |
| C5—C6—C7—C8 | −0.2 (3) | C9—C10—C11—N1 | 179.54 (14) |
| C6—C7—C8—C9 | 0.1 (3) | N1—C12—C13—C14 | 179.84 (13) |
| C7—C8—C9—C4 | 0.3 (2) | C12—C13—C14—C15 | −178.46 (13) |
| C7—C8—C9—C10 | −179.84 (16) | C13—C14—C15—C16 | 177.58 (14) |
| C5—C4—C9—C8 | −0.5 (2) | C14—C15—C16—C17 | 179.05 (13) |
| C3—C4—C9—C8 | 179.13 (15) | C15—C16—C17—C17i | 179.32 (17) |
| C5—C4—C9—C10 | 179.57 (15) | C10—C11—N1—C12 | −179.25 (14) |
| C3—C4—C9—C10 | −0.8 (2) | C13—C12—N1—C11 | −116.21 (16) |
| O1—C1—C10—C11 | −3.3 (2) |
| H··· | ||||
| N1—H1 | 0.94 (2) | 1.75 (2) | 2.5498 (18) | 140.6 (19) |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N1H1 | 0.94(2) | 1.75(2) | 2.5498(18) | 140.6(19) |