Literature DB >> 25995895

Crystal structure of μ-peroxido-κ(4) O (1),O (2):O (1'),O (2')-bis-[(nitrato-κO)(2,2':6',2''-terpyridine-κ(3) N,N',N'')dioxidouranium(VI)].

Takeshi Kawasaki1, Takafumi Kitazawa2.   

Abstract

In the title dimeric complex, [{UO2(NO3)(C15H11N3)}2O2], a peroxide ion bridges the two uran-yl(VI) [O=U=O](2+) ions. The O-O bond length of the peroxide is 1.485 (6) Å and the mid-point of this bond is located at the inversion centre of the dimer. The U atom exhibits a distorted hexa-gonal-bipyramidal coordination geometry with two uran-yl(VI) O atoms occupying the axial positions and one O atom of the monodentate nitrate ion, both O atoms of the peroxide ion and the three N atoms of the chelating tridentate 2,2':6',2''-terpyridine (terpy) ligand in the equatorial positions. Two of the N atoms of the terpy ligand lie above and below the mean plane containing the equatorial ligand atoms and the U atom [deviations from the mean plane: maximum 0.500 (2), minimum -0.472 (2) and r.m.s. = 0.2910 Å]. The dihedral angle between the terpy ligand and the mean plane is 35.61 (7)°. The bond lengths around the U atom decrease in the order U-N > U-Onitrate > U-Operoxo > U=O. The dimeric complexes pack in a three-dimensional network held together by weak π-π inter-actions [centroid-centroid distance = 3.659 (3) Å] between pyridyl rings of the terpy ligands in neighbouring dimers, together with inter-molecular C-H⋯O and C-H⋯π inter-actions. Weak intra-molecular C-H⋯O inter-actions are also observed.

Entities:  

Keywords:  2,2′:6′,2′′-terpyridine; crystal structure; dimer; peroxide; uranium(VI) complex; uran­yl(VI) ion

Year:  2015        PMID: 25995895      PMCID: PMC4420076          DOI: 10.1107/S2056989015007987

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the structures of uran­yl(VI) complexes with terpy, see: Berthet et al. (2004 ▸). For the structures of uran­yl(VI) μ-κ2:κ2-peroxide complexes, see:Charushnikova et al. (2001 ▸); Goff et al. (2008 ▸); John et al. (2004 ▸); Sigmon et al. (2009 ▸); Takao & Ikeda (2010 ▸). For the structures of a uran­yl(VI) complex with terpy and a uran­yl(VI) μ-κ2:κ2-peroxide complex, see: Charushnikova & Den Auwer (2004 ▸).

Experimental

Crystal data

[U2(NO3)2(O2)O4(C15H11N3)2] M = 1162.62 Monoclinic, a = 13.4924 (11) Å b = 10.2791 (8) Å c = 12.6977 (10) Å β = 114.691 (1)° V = 1600.0 (2) Å3 Z = 2 Mo Kα radiation μ = 10.19 mm−1 T = 90 K 0.28 × 0.14 × 0.06 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: analytical (XPREP; Bruker, 2007 ▸) T min = 0.163, T max = 0.580 11692 measured reflections 4695 independent reflections 3636 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.058 S = 0.89 4695 reflections 235 parameters H-atom parameters constrained Δρmax = 2.24 e Å−3 Δρmin = −1.57 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015007987/cq2015sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007987/cq2015Isup2.hkl Click here for additional data file. 2 3 15 11 3 2 2 x y z . DOI: 10.1107/S2056989015007987/cq2015fig1.tif Structure of the dimer [{UO2(NO3)(C15H11N3)}2O2]. Displacement ellipsoids are drawn at the 50% probability level. H atoms are omitted for clarity. [Symmetry code: (i) −x + 1, −y + 1, −z + 1] Click here for additional data file. 2 3 15 11 3 2 2 . DOI: 10.1107/S2056989015007987/cq2015fig2.tif Packing diagram of [{UO2(NO3)(C15H11N3)}2O2]. Dashed lines and dotted lines are π–π and C—H⋯π inter­actions, respectively. CCDC reference: 1061056 Additional supporting information: crystallographic information; 3D view; checkCIF report
[U2(NO3)2(O2)O4(C15H11N3)2]F(000) = 1076
Mr = 1162.62Dx = 2.413 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4370 reflections
a = 13.4924 (11) Åθ = 2.6–30.1°
b = 10.2791 (8) ŵ = 10.19 mm1
c = 12.6977 (10) ÅT = 90 K
β = 114.691 (1)°Plate, orange
V = 1600.0 (2) Å30.28 × 0.14 × 0.06 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer4695 independent reflections
Radiation source: fine-focus sealed tube3636 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.063
Detector resolution: 8.333 pixels mm-1θmax = 31.0°, θmin = 2.6°
phi and ω scansh = −19→17
Absorption correction: analytical (XPREP; Bruker, 2007)k = −14→5
Tmin = 0.163, Tmax = 0.580l = −18→18
11692 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.058H-atom parameters constrained
S = 0.89w = 1/[σ2(Fo2) + (0.0123P)2] where P = (Fo2 + 2Fc2)/3
4695 reflections(Δ/σ)max = 0.001
235 parametersΔρmax = 2.24 e Å3
0 restraintsΔρmin = −1.57 e Å3
Experimental. face-indexed absorption correction carried out with XPREP (Bruker, 2007)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
U10.387048 (13)0.333645 (14)0.466857 (14)0.00993 (5)
O10.3311 (3)0.3633 (3)0.3151 (3)0.0176 (7)
O20.4441 (3)0.2963 (3)0.6171 (3)0.0168 (7)
O30.4596 (3)0.5439 (3)0.5073 (4)0.0306 (10)
O40.2546 (2)0.4979 (3)0.4721 (3)0.0152 (6)
O50.1152 (3)0.4243 (3)0.3199 (3)0.0242 (8)
O60.1038 (3)0.6064 (3)0.4006 (3)0.0283 (9)
N10.5298 (3)0.1823 (3)0.4461 (3)0.0126 (7)
N20.3249 (3)0.1020 (3)0.3740 (3)0.0097 (7)
N30.2240 (3)0.2190 (3)0.4857 (3)0.0129 (7)
N40.1554 (3)0.5090 (4)0.3945 (3)0.0165 (8)
C10.6361 (4)0.2172 (4)0.4933 (4)0.0142 (9)
H10.65850.28510.54910.017*
C20.7141 (4)0.1591 (4)0.4644 (4)0.0147 (9)
H20.78820.18580.50060.018*
C30.6820 (4)0.0616 (4)0.3821 (4)0.0157 (9)
H30.73290.02260.35800.019*
C40.5733 (3)0.0215 (4)0.3351 (4)0.0146 (9)
H40.5494−0.04680.27970.018*
C50.5008 (3)0.0823 (4)0.3700 (4)0.0109 (8)
C60.3841 (3)0.0422 (4)0.3258 (4)0.0116 (8)
C70.3392 (4)−0.0538 (4)0.2412 (4)0.0149 (9)
H70.3831−0.09770.21030.018*
C80.2299 (4)−0.0839 (4)0.2032 (4)0.0163 (9)
H80.1971−0.14640.14360.020*
C90.1686 (4)−0.0219 (4)0.2529 (4)0.0164 (9)
H90.0934−0.04150.22810.020*
C100.2192 (3)0.0695 (4)0.3396 (4)0.0108 (8)
C110.1638 (4)0.1318 (4)0.4050 (4)0.0118 (8)
C120.0579 (4)0.0988 (4)0.3906 (4)0.0173 (10)
H120.01480.03960.33180.021*
C130.0181 (4)0.1539 (5)0.4633 (5)0.0229 (11)
H13−0.05430.13520.45300.027*
C140.0819 (4)0.2362 (4)0.5515 (4)0.0193 (10)
H140.05640.27020.60520.023*
C150.1850 (4)0.2679 (4)0.5589 (4)0.0156 (9)
H150.22930.32610.61790.019*
U11U22U33U12U13U23
U10.01075 (8)0.00727 (7)0.01268 (8)−0.00116 (7)0.00578 (6)−0.00132 (7)
O10.0249 (18)0.0142 (15)0.0175 (17)0.0044 (14)0.0126 (15)0.0039 (13)
O20.0163 (16)0.0199 (15)0.0080 (16)0.0007 (14)−0.0011 (13)−0.0061 (13)
O30.0182 (18)0.0076 (14)0.075 (3)0.0007 (14)0.028 (2)−0.0085 (17)
O40.0111 (14)0.0162 (14)0.0164 (16)0.0003 (14)0.0038 (13)0.0012 (14)
O50.0236 (18)0.0189 (16)0.023 (2)0.0019 (15)0.0024 (16)−0.0031 (15)
O60.0224 (19)0.0228 (17)0.034 (2)0.0124 (16)0.0064 (17)−0.0034 (17)
N10.0164 (18)0.0082 (16)0.0143 (19)−0.0006 (15)0.0076 (16)−0.0001 (14)
N20.0126 (17)0.0074 (15)0.0074 (17)−0.0017 (14)0.0025 (15)0.0016 (13)
N30.0180 (19)0.0115 (16)0.0102 (19)0.0002 (16)0.0069 (16)0.0012 (14)
N40.0161 (18)0.0158 (17)0.017 (2)0.0033 (18)0.0066 (16)0.0043 (17)
C10.018 (2)0.0094 (18)0.016 (2)−0.0009 (18)0.007 (2)0.0004 (17)
C20.016 (2)0.0102 (18)0.019 (2)0.0000 (19)0.0094 (19)0.0028 (18)
C30.022 (2)0.016 (2)0.014 (2)0.0001 (19)0.012 (2)0.0025 (18)
C40.018 (2)0.015 (2)0.010 (2)0.0022 (18)0.0046 (18)0.0002 (17)
C50.013 (2)0.0101 (18)0.008 (2)0.0009 (17)0.0025 (17)0.0038 (16)
C60.014 (2)0.0117 (19)0.009 (2)0.0030 (17)0.0043 (18)0.0006 (16)
C70.018 (2)0.015 (2)0.013 (2)−0.0036 (19)0.0064 (19)−0.0046 (17)
C80.022 (2)0.014 (2)0.009 (2)−0.0040 (19)0.0031 (19)−0.0054 (17)
C90.016 (2)0.018 (2)0.013 (2)−0.0082 (19)0.0035 (18)−0.0031 (18)
C100.013 (2)0.0084 (18)0.009 (2)−0.0002 (17)0.0033 (17)−0.0006 (16)
C110.014 (2)0.0091 (18)0.010 (2)0.0002 (17)0.0036 (17)0.0012 (16)
C120.017 (2)0.016 (2)0.019 (3)−0.0022 (19)0.007 (2)0.0003 (19)
C130.014 (2)0.026 (2)0.032 (3)−0.004 (2)0.013 (2)−0.002 (2)
C140.024 (3)0.017 (2)0.023 (3)−0.001 (2)0.016 (2)−0.0033 (19)
C150.021 (2)0.013 (2)0.013 (2)−0.0002 (19)0.0074 (19)−0.0010 (17)
U1—O11.777 (3)C2—H20.9500
U1—O21.775 (3)C3—C41.395 (6)
U1—O32.340 (3)C3—H30.9500
U1—O3i2.325 (3)C4—C51.380 (6)
U1—O42.479 (3)C4—H40.9500
U1—N12.574 (3)C5—C61.492 (6)
U1—N22.634 (3)C6—C71.397 (6)
U1—N32.593 (3)C7—C81.381 (6)
O3—O3i1.485 (6)C7—H70.9500
O3—U1i2.325 (3)C8—C91.388 (6)
O4—N41.295 (5)C8—H80.9500
O5—N41.232 (5)C9—C101.391 (6)
O6—N41.240 (4)C9—H90.9500
N1—C11.351 (6)C10—C111.476 (6)
N1—C51.351 (5)C11—C121.404 (6)
N2—C61.342 (5)C12—C131.369 (6)
N2—C101.347 (5)C12—H120.9500
N3—C151.343 (5)C13—C141.380 (7)
N3—C111.348 (5)C13—H130.9500
C1—C21.386 (6)C14—C151.393 (6)
C1—H10.9500C14—H140.9500
C2—C31.380 (6)C15—H150.9500
Cg(C1–C5/N1)···Cg(C6–C10/N2)ii3.659 (3)
O1—U1—O2177.31 (13)N1—C1—H1118.3
O1—U1—O391.64 (14)C2—C1—H1118.3
O1—U1—O3i90.58 (14)C3—C2—C1118.7 (4)
O1—U1—O485.85 (12)C3—C2—H2120.7
O2—U1—O390.58 (14)C1—C2—H2120.7
O2—U1—O3i90.28 (15)C2—C3—C4118.7 (4)
O2—U1—O496.43 (12)C2—C3—H3120.7
O3i—U1—O337.12 (13)C4—C3—H3120.7
O3—U1—O466.75 (10)C5—C4—C3119.2 (4)
O3i—U1—O4103.66 (10)C5—C4—H4120.4
O1—U1—N189.42 (13)C3—C4—H4120.4
O2—U1—N188.43 (13)N1—C5—C4122.8 (4)
O3—U1—N1108.56 (10)N1—C5—C6115.1 (4)
O3i—U1—N171.44 (10)C4—C5—C6122.1 (4)
O4—U1—N1173.19 (10)N2—C6—C7121.7 (4)
O1—U1—N276.01 (12)N2—C6—C5115.9 (4)
O2—U1—N2101.52 (12)C7—C6—C5122.4 (4)
O3—U1—N2163.57 (12)C8—C7—C6118.9 (4)
O3i—U1—N2130.60 (10)C8—C7—H7120.5
O4—U1—N2121.97 (10)C6—C7—H7120.5
O1—U1—N3100.67 (13)C7—C8—C9119.4 (4)
O2—U1—N378.83 (13)C7—C8—H8120.3
O3—U1—N3133.88 (11)C9—C8—H8120.3
O3i—U1—N3166.46 (13)C8—C9—C10118.7 (4)
O4—U1—N370.03 (11)C8—C9—H9120.6
N1—U1—N261.29 (11)C10—C9—H9120.6
N1—U1—N3115.77 (11)N2—C10—C9121.8 (4)
N2—U1—N360.44 (11)N2—C10—C11115.3 (4)
O3i—O3—U1i72.0 (2)C9—C10—C11122.8 (4)
O3i—O3—U170.9 (2)N3—C11—C12121.2 (4)
U1i—O3—U1142.88 (13)N3—C11—C10115.4 (4)
N4—O4—U1124.6 (3)C12—C11—C10123.3 (4)
C1—N1—C5117.1 (4)C13—C12—C11118.4 (4)
C1—N1—U1119.7 (3)C13—C12—H12120.8
C5—N1—U1121.8 (3)C11—C12—H12120.8
C6—N2—C10119.3 (4)C12—C13—C14120.9 (4)
C6—N2—U1118.7 (3)C12—C13—H13119.6
C10—N2—U1117.7 (3)C14—C13—H13119.6
C11—N3—C15119.2 (4)C13—C14—C15117.7 (4)
C11—N3—U1119.9 (3)C13—C14—H14121.2
C15—N3—U1119.1 (3)C15—C14—H14121.2
O4—N4—O5120.4 (4)N3—C15—C14122.4 (4)
O4—N4—O6116.9 (4)N3—C15—H15118.8
O5—N4—O6122.7 (4)C14—C15—H15118.8
N1—C1—C2123.4 (4)
D—H···AD—HH···AD···AD—H···A
C1—H1···O3i0.952.282.773 (6)112
C1—H1···O4i0.952.593.225 (5)125
C2—H2···O6i0.952.593.357 (6)137
C3—H3···O1iii0.952.583.176 (6)121
C4—H4···O1iii0.952.553.162 (6)122
C12—H12···O5iv0.952.323.256 (6)169
C14—H14···O6v0.952.483.246 (7)138
C15—H15···Cg2vi0.952.623.512 (5)157
AtomDeviation
U10.0370(0.0010)
O30.0090(0.0041)
O3i0.0555(0.0042)
O4-0.2956(0.0023)
N10.1666(0.0024)
N2-0.4723(0.0024)
N30.4999(0.0024)
U1O11.777(3)
U1O21.775(3)
U1O32.340(3)
U1O3i 2.325(3)
U1O42.479(3)
U1N12.574(3)
U1N22.634(3)
U1N32.593(3)
O3O3i 1.485(6)
O4N41.295(5)
O5N41.232(5)
O6N41.240(4)
O1U1O2177.31(13)
O1U1O391.64(14)
O1U1O3i 90.58(14)
O1U1O485.85(12)
O3iU1O337.12(13)
O3U1O466.75(10)
O1U1N189.42(13)
O3iU1N171.44(10)
O1U1N276.01(12)
O1U1N3100.67(13)
O4U1N370.03(11)
N1U1N261.29(11)
N2U1N360.44(11)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (, )

Cg2 is the centroid of the C6C10/N2 ring.

DHA DHHA D A DHA
C1H1O3i 0.952.282.773(6)112
C1H1O4i 0.952.593.225(5)125
C2H2O6i 0.952.593.357(6)137
C3H3O1ii 0.952.583.176(6)121
C4H4O1ii 0.952.553.162(6)122
C12H12O5iii 0.952.323.256(6)169
C14H14O6iv 0.952.483.246(7)138
C15H15Cg2v 0.952.623.512(5)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Oxygen and nitrogen Lewis base adducts of [UO2(OTf)2]. Crystal structures of polypyridine complexes with out-of-plane uranyl equatorial coordination.

Authors:  Jean-Claude Berthet; Martine Nierlich; M Ephritikhine
Journal:  Dalton Trans       Date:  2004-08-03       Impact factor: 4.390

3.  The structural and spectroscopic characterisation of three actinyl complexes with coordinated and uncoordinated perrhenate: [UO2(ReO4)2(TPPO)3], [[(UO2)(TPPO)3]2(mu2-O2)][ReO4]2 and [NpO2(TPPO)4][ReO4].

Authors:  Gordon H John; Iain May; Mark J Sarsfield; Helen M Steele; David Collison; Madeleine Helliwell; James D McKinney
Journal:  Dalton Trans       Date:  2004-01-30       Impact factor: 4.390

4.  μ-η:η-Peroxido-bis-[nitratodioxido-bis(pyrrolidin-2-one)uranium(VI)].

Authors:  Koichiro Takao; Yasuhisa Ikeda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-21

5.  Uranyl-peroxide interactions favor nanocluster self-assembly.

Authors:  Ginger E Sigmon; Jie Ling; Daniel K Unruh; Laura Moore-Shay; Matthew Ward; Brittany Weaver; Peter C Burns
Journal:  J Am Chem Soc       Date:  2009-11-25       Impact factor: 15.419

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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