Literature DB >> 25993703

A Stochastic Polygons Model for Glandular Structures in Colon Histology Images.

Korsuk Sirinukunwattana, David R J Snead, Nasir M Rajpoot.   

Abstract

In this paper, we present a stochastic model for glandular structures in histology images of tissue slides stained with Hematoxylin and Eosin, choosing colon tissue as an example. The proposed Random Polygons Model (RPM) treats each glandular structure in an image as a polygon made of a random number of vertices, where the vertices represent approximate locations of epithelial nuclei. We formulate the RPM as a Bayesian inference problem by defining a prior for spatial connectivity and arrangement of neighboring epithelial nuclei and a likelihood for the presence of a glandular structure. The inference is made via a Reversible-Jump Markov chain Monte Carlo simulation. To the best of our knowledge, all existing published algorithms for gland segmentation are designed to mainly work on healthy samples, adenomas, and low grade adenocarcinomas. One of them has been demonstrated to work on intermediate grade adenocarcinomas at its best. Our experimental results show that the RPM yields favorable results, both quantitatively and qualitatively, for extraction of glandular structures in histology images of normal human colon tissues as well as benign and cancerous tissues, excluding undifferentiated carcinomas.

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Year:  2015        PMID: 25993703     DOI: 10.1109/TMI.2015.2433900

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  25 in total

1.  Requirements for the formal representation of pathophysiology mechanisms by clinicians.

Authors:  B de Bono; M Helvensteijn; N Kokash; I Martorelli; D Sarwar; S Islam; P Grenon; P Hunter
Journal:  Interface Focus       Date:  2016-04-06       Impact factor: 3.906

2.  Connecting Markov random fields and active contour models: application to gland segmentation and classification.

Authors:  Jun Xu; James P Monaco; Rachel Sparks; Anant Madabhushi
Journal:  J Med Imaging (Bellingham)       Date:  2017-03-28

3.  Gland segmentation in prostate histopathological images.

Authors:  Malay Singh; Emarene Mationg Kalaw; Danilo Medina Giron; Kian-Tai Chong; Chew Lim Tan; Hwee Kuan Lee
Journal:  J Med Imaging (Bellingham)       Date:  2017-06-21

4.  Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations.

Authors:  Niccolò Marini; Stefano Marchesin; Sebastian Otálora; Marek Wodzinski; Alessandro Caputo; Mart van Rijthoven; Witali Aswolinskiy; John-Melle Bokhorst; Damian Podareanu; Edyta Petters; Svetla Boytcheva; Genziana Buttafuoco; Simona Vatrano; Filippo Fraggetta; Jeroen van der Laak; Maristella Agosti; Francesco Ciompi; Gianmaria Silvello; Henning Muller; Manfredo Atzori
Journal:  NPJ Digit Med       Date:  2022-07-22

5.  Comparative analysis of high- and low-level deep learning approaches in microsatellite instability prediction.

Authors:  Jeonghyuk Park; Yul Ri Chung; Akinao Nose
Journal:  Sci Rep       Date:  2022-07-18       Impact factor: 4.996

Review 6.  Image analysis and machine learning in digital pathology: Challenges and opportunities.

Authors:  Anant Madabhushi; George Lee
Journal:  Med Image Anal       Date:  2016-07-04       Impact factor: 8.545

7.  Deep learning based tissue analysis predicts outcome in colorectal cancer.

Authors:  Dmitrii Bychkov; Nina Linder; Riku Turkki; Stig Nordling; Panu E Kovanen; Clare Verrill; Margarita Walliander; Mikael Lundin; Caj Haglund; Johan Lundin
Journal:  Sci Rep       Date:  2018-02-21       Impact factor: 4.379

8.  Glandular Morphometrics for Objective Grading of Colorectal Adenocarcinoma Histology Images.

Authors:  Ruqayya Awan; Korsuk Sirinukunwattana; David Epstein; Samuel Jefferyes; Uvais Qidwai; Zia Aftab; Imaad Mujeeb; David Snead; Nasir Rajpoot
Journal:  Sci Rep       Date:  2017-12-04       Impact factor: 4.379

9.  Segmentation and classification of colon glands with deep convolutional neural networks and total variation regularization.

Authors:  Philipp Kainz; Michael Pfeiffer; Martin Urschler
Journal:  PeerJ       Date:  2017-10-03       Impact factor: 2.984

10.  Deep Learning for Classification of Colorectal Polyps on Whole-slide Images.

Authors:  Bruno Korbar; Andrea M Olofson; Allen P Miraflor; Catherine M Nicka; Matthew A Suriawinata; Lorenzo Torresani; Arief A Suriawinata; Saeed Hassanpour
Journal:  J Pathol Inform       Date:  2017-07-25
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