| Literature DB >> 25984652 |
Jun Wang1, Lan Tan1,2,3,4, Lin Tan2, Yan Tian1, Jing Ma1, Chen-Chen Tan1, Hui-Fu Wang3, Ying Liu4, Meng-Shan Tan2, Teng Jiang5, Jin-Tai Yu1,2,3.
Abstract
MicroRNAs (miRNAs) open up a new field for molecular diagnosis for cancer and other diseases based on their stability in serum. However, the role of circulating miRNAs in plasma/serum in epilepsy diagnosis is still unclear. The aim of this study was to evaluate whether miRNAs can be used as biomarkers for drug-resistant epilepsy. We measured the differences in serum miRNA levels between 30 drug-resistant patients and 30 drug-responsive epilepsy patients in discovery and training phases using Illumina HiSeq2000 sequencing followed by quantitative reverse transcriptase polymerase chain reaction (qRT-PCR) assays. The selected miRNAs were then validated in 77 drug-resistant epilepsy patients, 81 drug-responsive epilepsy patients and 85 healthy controls by qRT-PCR. We found that circulating miRNAs are differentially expressed between drug-resistant group and drug-responsive group. MiR-194-5p, -301a-3p, -30b-5p, -342-5p and -4446-3p were significantly deregulated in drug-resistant group compared to drug-responsive group and control group. Among these 5 miRNAs, miR-301a-3p had the best diagnostic value for drug-resistant epilepsy with 80.5% sensitivity and 81.2% specificity, and was negatively associated with seizure severity. These provide the rationale for further confirmation studies in larger prospective cohorts and in other ethnics.Entities:
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Year: 2015 PMID: 25984652 PMCID: PMC4435024 DOI: 10.1038/srep10201
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Clinical characteristics of individuals.
| No. | 30 | 30 | 77 | 81 | 85 | ||
| Age, mean ± SD(y) | 31.43 ± 8.29 | 26.80 ± 13.44 | 0.155 | 32.44 ± 13.01 | 29.28 ± 10.86 | 32.49 ± 9.57 | 0.114 |
| Female:Male | 14:16 | 16:14 | 0.797 | 37:40 | 40:41 | 39:46 | 0.901 |
| BMI, mean ± SD(kg/m2) | 23.27 ± 3.98 | 22.31 ± 3.94 | 0.487 | 24.20 ± 3.88 | 22.78 ± 4.31 | 23.39 ± 3.26 | 0.067 |
| Disease Duration, median(range)(y) | 10(2-32) | 2(1-20) | <0.001 | 11(2-39) | 3(1-20) | NA | <0.001 |
| Seizure frequency, median(range)(/6 month) | 22(3-127) | NA | 12(1-180) | NA | NA | ||
| NHS3 Score | 13.23 ± 2.98 | NA | 11.50 ± 3.30 | NA | NA | ||
| AED therapy at the last clinic visit | |||||||
| Monotherapy | 2(6.7%) | 21(70.0%) | 7(9.1%) | 62(76.5) | NA | ||
| Polytherapy | 28(93.3%) | 9(30.0%) | 70(90.9%) | 19(23.5) | NA | ||
Abbreviations: SD, standard deviation; BMI, body mass index; NHS3, National Hospital Seizure Severity Scale; AED, antiepileptic drug; NA, not applicable.
Figure 1The circulating miRNAs signatures identified by Illumina Hiseq2000 sequencing.
The length distribution and frequency percentages of the sequences identified in drug-resistant epilepsy samples (A) and drug-responsive epilepsy samples (B) RNA species in drug-resistant epilepsy samples (C) and drug-responsive epilepsy samples (D) and RNA read counts in drug-resistant epilepsy samples (E) and drug-responsive epilepsy samples (F).
Figure 2Differential expression of miRNAs in drug-resistant epilepsy patients.
A Significantly downregulated miRNAs in drug-resistant epilepsy compared to drug-responsive epilepsy in secondary screening stage. B Large-scale validation of the 6 miRNAs selected from secondary screening in drug-resistant epilepsy compared to drug-responsive epilepsy and controls. The blue dots represent health control group, green dots represent drug-responsive group, and purple dots represent drug-resistant group. Expression levels of the miRNAs (LnΔCq scale at Y-axis) were normalized to spiked-in cel-miR-39. The line represents the median value. Mann-Whitney U test was used to determine statistical significance.
Figure 3Receiver operating characteristic (ROC) curve analysis using 5 serum miRNAs selected in large-scale validation and the miRNA panel for discriminating drug-resistant epilepsy from drug-responsive epilepsy.
AUC, area under the ROC curve.
Figure 4Correlation between the National Hospital Seizure Severity Scale (NHS3) scores and the expression level of miR-301a-3p.
Serum miR-301a-3p level was significantly associated with the NHS3 scores in drug-resistant epilepsy patients (r = 0.604, P = 6.2 × 10−9). Expression level of miR-301a-3p (LnΔCq scale at Y-axis) were normalized to spiked-in cel-miR-39.
Figure 5Overview of the study design.
qRT-PCR, quantitative reverse transcriptase polymerase chain reaction.