| Literature DB >> 25983750 |
Qing Ni1, Anlai Ji1, Junfeng Yin1, Xiangjun Wang1, Xinnong Liu1.
Abstract
Background. Single nucleotide polymorphisms (SNPs) in genes encoding microRNAs may play important role in the development of gastric cancer. It has been reported that common SNPs rs2910164 in miR-146a and rs11614913 in miR-196a2 are associated with susceptibility to gastric cancer. The published results remain inconclusive or even controversial. A meta-analysis was conducted to quantitatively assess potential association between the two common SNPs and gastric cancer risk. Methods. A comprehensive literature search was performed in multiple internet-based electronic databases. Data from 12 eligible studies were extracted to estimate pooled odds ratios (ORs) and 95% confidence intervals (95% CI). Results. C allele of rs2910164 is associated with reduced gastric cancer risk in heterozygote model and dominant model whereas rs11614913 indicates no significant association. Subgroup analysis demonstrates that C allele of rs2910164 and rs11614913 may decrease susceptibility to diffuse type gastric cancer in dominant model and recessive model, respectively, while rs11614913 increased intestinal type gastric cancer in dominant model. Conclusion. SNPs rs2910164 and rs11614913 might have effect on gastric cancer risk in certain genetic models and specific types of cancer. Further well-designed studies should be considered to validate the potential effect.Entities:
Year: 2015 PMID: 25983750 PMCID: PMC4423019 DOI: 10.1155/2015/764163
Source DB: PubMed Journal: Gastroenterol Res Pract ISSN: 1687-6121 Impact factor: 2.260
Figure 1Flow diagram of study search and selection.
Characteristics of included studies on rs2910164.
| Author | Year | Country | Ethnicity | Study design | SNP | Genotyping methods | HWE | Case genotype | Control genotype | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GG | GC | CC | GG | GC | CC | ||||||||
|
Ahn et al. [ | 2013 | South Korea | Asian | HB | rs2910164 | PCR-RFLP | 0.362 | 71 | 231 | 159 | 62 | 221 | 164 |
| Dikeakos et al. [ | 2014 | Greece | Caucasian | HB | rs2910164 | PCR-RFLP | 0.289 | 13 | 45 | 105 | 24 | 149 | 307 |
| Hishida et al. [ | 2011 | Japan | Asian | HB | rs2910164 | PCR-CTPP | 0.738 | 82 | 271 | 230 | 229 | 775 | 633 |
| Kupcinskas et al. [ | 2014 | Germany/ | Caucasian | HB | rs2910164 | TaqMan | 0.531 | 252 | 94 | 16 | 223 | 108 | 16 |
| Okubo et al. [ | 2010 | Japan | Asian | HB | rs2910164 | PCR-RFLP | 0.278 | 73 | 243 | 236 | 121 | 322 | 254 |
| Parlayan et al. [ | 2014 | Japan | Asian | HB | rs2910164 | TaqMan | 0.640 | 20 | 79 | 61 | 71 | 237 | 216 |
| Pu et al. [ | 2014 | China | Asian | HB | rs2910164 | PCR-RFLP | 0.080 | 36 | 96 | 65 | 96 | 274 | 143 |
| Zeng et al. [ | 2010 | China | Asian | HB | rs2910164 | PCR-RFLP | 0.122 | 62 | 153 | 89 | 53 | 132 | 119 |
|
Zhou et al. [ | 2012 | China | Asian | HB | rs2910164 | TaqMan | 0.544 | 248 | 380 | 122 | 236 | 424 | 175 |
| 0.929 | 330 | 442 | 164 | 315 | 527 | 218 | |||||||
SNP, single nucleotide polymorphism; HB, hospital based; PCR-RFLP, polymerase chain reaction-restriction fragment length polymorphism; PCR-CTPP, polymerase chain reaction with confronting two-pair primers; HWE, P value for Hardy-Weinberg equilibrium test.
Characteristics of included studies on rs11614913.
| Author | Year | Country | Ethnicity | Study design | SNP | Genotyping methods | HWE | Case genotype | Control genotype | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TT | TC | CC | TT | TC | CC | ||||||||
| Ahn et al. [ | 2013 | South Korea | Asian | HB | rs11614913 | PCR-RFLP | 0.322 | 119 | 242 | 100 | 128 | 232 | 87 |
| Dikeakos et al. [ | 2014 | Greece | Caucasian | HB | rs11614913 | PCR-RFLP | 0.850 | 15 | 46 | 102 | 172 | 229 | 79 |
| Kupcinskas et al. [ | 2014 | Germany/ | Caucasian | HB | rs11614913 | TaqMan | 0.161 | 35 | 184 | 144 | 46 | 145 | 159 |
| Okubo et al. [ | 2010 | Japan | Asian | HB | rs11614913 | PCR-RFLP | 0.510 | 166 | 281 | 105 | 223 | 350 | 124 |
| Parlayan et al. [ | 2014 | Japan | Asian | HB | rs11614913 | TaqMan | 0.410 | 44 | 72 | 44 | 146 | 270 | 108 |
| Peng et al. [ | 2010 | China | Asian | HB | rs11614913 | PCR-RFLP | 0.936 | 43 | 94 | 76 | 50 | 107 | 56 |
| Pu et al. [ | 2014 | China | Asian | HB | rs11614913 | PCR-RFLP | <0.01 | 25 | 95 | 39 | 86 | 324 | 101 |
|
Wang et al. [ | 2013 | China | Asian | HB | rs11614913 | TaqMan | 0.898 | 226 | 371 | 152 | 232 | 448 | 220 |
| 0.058 | 293 | 480 | 167 | 292 | 492 | 262 | |||||||
| Yang et al. [ | 2013 | China | Asian | PB | rs11614913 | TaqMan | 0.100 | 21 | 109 | 102 | 42 | 136 | 72 |
SNP, single nucleotide polymorphism; HB, hospital based; PB, population based; PCR-RFLP, polymerase chain reaction-restriction fragment length polymorphism; HWE, P value for Hardy-Weinberg equilibrium test.
Summary of pooled ORs in meta-analyses of rs2910164.
| Genetic model | Pooled OR [95% CI] |
|
|
|---|---|---|---|
| C versus G | 0.94 [0.85–1.04] | 0.21 | 0.003 |
| GC versus GG | 0.89 [0.81–0.99] | 0.03 | 0.43 |
| CC versus GG | 0.89 [0.72–1.08] | 0.23 | 0.009 |
| GC + CC versus GG | 0.88 [0.80–0.97] | 0.009 | 0.12 |
| CC versus GC + GG | 0.94 [0.81–1.08] | 0.38 | 0.008 |
OR, odds ratio; 95% CI, 95% confidence interval; P hetero, P value for heterogeneity test.
Figure 2Forest plots of meta-analyses on rs2910164 in miR-146a. (a) Meta-analysis comparing heterozygous GC with GG. (b) Meta-analysis under dominant model (GC + CC versus GG). (c) Subgroup analysis in diffuse type gastric cancer using dominant model (GC + CC versus GG). The blue squares and corresponding horizontal lines indicate odds ratio of individual study. The area of the squares reflects weight of indicated study. The black filled diamond represents pooled odds ratio and 95% confidence interval.
Summary of pooled ORs in subgroup analyses.
| SNP | Number of studies | Subgroup | Genetic model | Pooled OR [95% CI] |
|
|
|---|---|---|---|---|---|---|
| rs2910164 | 4 | Intestinal type | GC + CC versus GG | 0.95 [0.72–1.25] | 0.7 | 0.04 |
| rs2910165 | 4 | Diffuse type | GC + CC versus GG | 0.86 [0.74–0.99] | 0.04 | 0.11 |
| rs2910164 | 3 | Intestinal type | CC versus GG + GC | 0.91 [0.76–1.11] | 0.36 | 0.33 |
| rs2910165 | 3 | Diffuse type | CC versus GG + GC | 0.88 [0.68–1.14] | 0.33 | 0.26 |
| rs11614913 | 3 | Cardiac lesion | CC versus TT + TC | 0.91 [0.51–1.64] | 0.76 | 0.04 |
| rs11614913 | 3 | Noncardiac lesion | CC versus TT + TC | 1.10 [0.63–1.89] | 0.74 | 0.0002 |
| rs11614913 | 3 | Lymph node negative | CC versus TT + TC | 0.89 [0.74–1.07] | 0.22 | 0.15 |
| rs11614913 | 3 | Lymph node positive | CC versus TT + TC | 1.54 [0.54–4.35] | 0.42 | <0.00001 |
| rs11614913 | 3 | Intestinal type | TC + CC versus TT | 1.27 [1.03–1.55] | 0.02 | 0.23 |
| rs11614913 | 3 | Diffuse type | TC + CC versus TT | 1.01 [0.78–1.32] | 0.92 | 0.55 |
| rs11614913 | 4 | Intestinal type | CC versus TT + TC | 0.91 [0.64–1.28] | 0.58 | 0.003 |
| rs11614913 | 4 | Diffuse type | CC versus TT + TC | 0.83 [0.71–0.97] | 0.02 | 0.4 |
OR, odds ratio; 95% CI, 95% confidence interval; P hetero, P value for heterogeneity test.
Summary of pooled ORs in meta-analyses of rs11614913.
| Genetic model | Pooled OR [95% CI] |
|
|
|---|---|---|---|
| C versus T | 1.25 [0.97–1.60] | 0.09 | <0.00001 |
| TC versus TT | 1.09 [0.94–1.28] | 0.25 | 0.06 |
| CC versus TT | 1.52 [0.96–2.39] | 0.07 | <0.00001 |
| TC + CC versus TT | 1.26 [0.98–1.63] | 0.07 | <0.00001 |
| CC versus TC + TT | 1.36 [0.90–2.05] | 0.14 | <0.00001 |
OR, odds ratio; 95% CI, 95% confidence interval; P hetero, P value for heterogeneity test.
Figure 3Forest plots of meta-analyses on rs11614913 in miR-196a2. (a) Subgroup analysis in diffuse type of gastric cancer using recessive model (CC versus TT + TC). (b) Subgroup analysis in intestinal type of gastric cancer under dominant model (TC + CC versus TT). The blue squares and corresponding horizontal lines indicate odds ratio of individual study. The area of the squares reflects weight of indicated study. The black filled diamond represents pooled odds ratio and 95% confidence interval.