Literature DB >> 25981484

Precise Genome Editing of Drosophila with CRISPR RNA-Guided Cas9.

Scott J Gratz1, Melissa M Harrison, Jill Wildonger, Kate M O'Connor-Giles.   

Abstract

The readily programmable CRISPR-Cas9 system is transforming genome engineering. We and others have adapted the S. pyogenes CRISPR-Cas9 system to precisely engineer the Drosophila genome and demonstrated that these modifications are efficiently transmitted through the germline. Here we provide a detailed protocol for engineering small indels, defined deletions, and targeted insertion of exogenous DNA sequences within one month using a rapid DNA injection-based approach.

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Year:  2015        PMID: 25981484      PMCID: PMC4467458          DOI: 10.1007/978-1-4939-2687-9_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  20 in total

1.  Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila.

Authors:  Zhongsheng Yu; Mengda Ren; Zhanxiang Wang; Bo Zhang; Yikang S Rong; Renjie Jiao; Guanjun Gao
Journal:  Genetics       Date:  2013-07-05       Impact factor: 4.562

2.  Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9.

Authors:  Xingjie Ren; Jin Sun; Benjamin E Housden; Yanhui Hu; Charles Roesel; Shuailiang Lin; Lu-Ping Liu; Zhihao Yang; Decai Mao; Lingzhu Sun; Qujie Wu; Jun-Yuan Ji; Jianzhong Xi; Stephanie E Mohr; Jiang Xu; Norbert Perrimon; Jian-Quan Ni
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

3.  RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions.

Authors:  Blake Wiedenheft; Esther van Duijn; Jelle B Bultema; Jelle Bultema; Sakharam P Waghmare; Sakharam Waghmare; Kaihong Zhou; Arjan Barendregt; Wiebke Westphal; Albert J R Heck; Albert Heck; Egbert J Boekema; Egbert Boekema; Mark J Dickman; Mark Dickman; Jennifer A Doudna
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-02       Impact factor: 11.205

4.  Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence.

Authors:  Ekaterina Semenova; Matthijs M Jore; Kirill A Datsenko; Anna Semenova; Edze R Westra; Barry Wanner; John van der Oost; Stan J J Brouns; Konstantin Severinov
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

5.  Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system.

Authors:  Andrew R Bassett; Charlotte Tibbit; Chris P Ponting; Ji-Long Liu
Journal:  Cell Rep       Date:  2013-07-01       Impact factor: 9.423

6.  Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases.

Authors:  Seung Woo Cho; Sojung Kim; Yongsub Kim; Jiyeon Kweon; Heon Seok Kim; Sangsu Bae; Jin-Soo Kim
Journal:  Genome Res       Date:  2013-11-19       Impact factor: 9.043

7.  Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease.

Authors:  Scott J Gratz; Alexander M Cummings; Jennifer N Nguyen; Danielle C Hamm; Laura K Donohue; Melissa M Harrison; Jill Wildonger; Kate M O'Connor-Giles
Journal:  Genetics       Date:  2013-05-24       Impact factor: 4.562

8.  Heritable and precise zebrafish genome editing using a CRISPR-Cas system.

Authors:  Woong Y Hwang; Yanfang Fu; Deepak Reyon; Morgan L Maeder; Prakriti Kaini; Jeffry D Sander; J Keith Joung; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  PLoS One       Date:  2013-07-09       Impact factor: 3.240

9.  A simplified and efficient germline-specific CRISPR/Cas9 system for Drosophila genomic engineering.

Authors:  Zachary L Sebo; Han B Lee; Ying Peng; Yi Guo
Journal:  Fly (Austin)       Date:  2013-10-18       Impact factor: 2.160

10.  CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity.

Authors:  Thomas J Cradick; Eli J Fine; Christopher J Antico; Gang Bao
Journal:  Nucleic Acids Res       Date:  2013-08-11       Impact factor: 16.971

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  22 in total

1.  Transcriptional Pre-patterning of Drosophila Gastrulation.

Authors:  Bomyi Lim; Yuji Yamazaki; Michael Levine
Journal:  Curr Biol       Date:  2017-01-12       Impact factor: 10.834

Review 2.  Genetic Dissection of Neural Circuits: A Decade of Progress.

Authors:  Liqun Luo; Edward M Callaway; Karel Svoboda
Journal:  Neuron       Date:  2018-04-18       Impact factor: 17.173

3.  Slo2/KNa Channels in Drosophila Protect against Spontaneous and Induced Seizure-like Behavior Associated with an Increased Persistent Na+ Current.

Authors:  Nathan Byers; Eu-Teum Hahm; Susan Tsunoda
Journal:  J Neurosci       Date:  2021-09-20       Impact factor: 6.167

4.  γ-secretase promotes Drosophila postsynaptic development through the cleavage of a Wnt receptor.

Authors:  Lucas J Restrepo; Alison T DePew; Elizabeth R Moese; Stephen R Tymanskyj; Michael J Parisi; Michael A Aimino; Juan Carlos Duhart; Hong Fei; Timothy J Mosca
Journal:  Dev Cell       Date:  2022-06-01       Impact factor: 13.417

5.  Divergent signaling requirements of dSARM in injury-induced degeneration and developmental glial phagocytosis.

Authors:  Kelsey A Herrmann; Yizhou Liu; Arnau Llobet-Rosell; Colleen N McLaughlin; Lukas J Neukomm; Jaeda C Coutinho-Budd; Heather T Broihier
Journal:  PLoS Genet       Date:  2022-06-23       Impact factor: 6.020

6.  Coacting enhancers can have complementary functions within gene regulatory networks and promote canalization.

Authors:  Leslie Dunipace; Zsuzsa Ákos; Angelike Stathopoulos
Journal:  PLoS Genet       Date:  2019-12-12       Impact factor: 5.917

Review 7.  Genome engineering: Drosophila melanogaster and beyond.

Authors:  Koen J T Venken; Alejandro Sarrion-Perdigones; Paul J Vandeventer; Nicholas S Abel; Audrey E Christiansen; Kristi L Hoffman
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-10-08       Impact factor: 5.814

8.  Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers.

Authors:  Zeba Wunderlich; Meghan D J Bragdon; Ben J Vincent; Jonathan A White; Javier Estrada; Angela H DePace
Journal:  Cell Rep       Date:  2015-09-03       Impact factor: 9.423

9.  A region of SLBP outside the mRNA-processing domain is essential for deposition of histone mRNA into the Drosophila egg.

Authors:  Jennifer Michelle Potter-Birriel; Graydon B Gonsalvez; William F Marzluff
Journal:  J Cell Sci       Date:  2021-02-11       Impact factor: 5.285

10.  Combinatorial patterns of graded RhoA activation and uniform F-actin depletion promote tissue curvature.

Authors:  Marlis Denk-Lobnig; Jan F Totz; Natalie C Heer; Jörn Dunkel; Adam C Martin
Journal:  Development       Date:  2021-06-14       Impact factor: 6.862

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